KEGG   Salvia splendens (scarlet sage): 121742730
Entry
121742730         CDS       T07627                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121742730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sspl04121]
    121742730
   03036 Chromosome and associated proteins [BR:sspl03036]
    121742730
Ubiquitin system [BR:sspl04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121742730
Chromosome and associated proteins [BR:sspl03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     121742730
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40 Beta-prop_WDR3_1st Beta-prop_EIPR1 WD40_WDHD1_1st WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_Aladin ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR35_TULP_N MIOS_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 121742730
NCBI-ProteinID: XP_041991915
LinkDB
Position
1:12852773..12856002
AA seq 333 aa
MENSTQESHPRPENVVTYESPFPIYAMAISAVNRRRVAVGSFIEELKNRVDILSFSEDSS
SLKPVPSLSFDHPYPPTKLLFHPSVSAPSNLLASSGDFLRLWEVKDSSIAAVSTLNNSKT
SEYSAPLTSFDWNEVEPRRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEAGV
FASVSADGSVRIFDLRDKEHSTIIYESPMPDTPLLRLAWNKQDLRYMATILMDSNKIVIL
DIRSPTMPVAELERHSASVNAIAWAPQSARHICSAGDDAQALLWELPTVAGPNGIDPMSM
YSAGAEINQLQWSAAQPDWIAVAFANKMQMLKV
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggaaaattcgacccaggaatctcacccccgccctgaaaatgtcgtcacctacgaatcc
ccctttccaatctacgccatggccatctccgccgtgaaccgccgccgcgtcgccgtcggc
agcttcatcgaggagctgaagaaccgcgtcgacatcctctcattctcggaagattcgtcc
tctctcaagcctgtcccttctctctccttcgaccacccttacccccccacgaaattactc
ttccacccctccgtctccgccccttccaacctcctcgcctcctccggcgacttcctccgt
ctctgggaggtcaaggactcctcaatcgcggccgtctccacgctcaacaacagcaaaacc
agcgagtactcggctccgctgacctcattcgactggaacgaggtcgagccgcggaggatc
ggaacgtcgagcatcgacacgacctgcacgatttgggatatcgagaagggcgtggtggag
acgcagctgatcgcgcacgacaaggaggtttacgacatagcttggggcgaggctggggtt
ttcgcgtcggtttcagcggacggctccgtgagaatcttcgatttgagggataaggagcat
tcgacgatcatctacgaaagccccatgccggatacgccgttgctgagattggcttggaat
aagcaggatttgaggtatatggcgacgatcttgatggatagcaataaaattgtgatattg
gatatcaggtctccgacaatgccggtggcggagctggagaggcatagtgctagtgtgaat
gcaattgcgtgggcgccgcagagtgctaggcatatttgctctgctggggacgatgcccag
gctttgctttgggagctgcccacggtagctggccccaatgggattgatcccatgtccatg
tactctgccggtgcagagattaaccagctgcagtggtcagccgcccagccggattggatt
gccgttgcgtttgccaacaagatgcaaatgctcaaagtttga

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