Salvia splendens (scarlet sage): 121742908
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Entry
121742908 CDS
T07627
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121742908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121742908
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121742908
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Peptidase_M15
Methyltransf_2
Motif
Other DBs
NCBI-GeneID:
121742908
NCBI-ProteinID:
XP_041991967
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Position
8:7779343..7783094
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AA seq
255 aa
AA seq
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MAGKPGAAAPTYSPSTGHRKKRPTIQTDSEWVRPDGRSLHQCRPAFLKTGAVNSSSGSAY
AEFGSTKVIVSVFGPRESKKAMMYSNAGRLNCNVSYTTFASPVRGQTPETKDISAMLHKA
LEGAIILKSFPKTTVDVFALVLESGGSDLPVITSCASLALADAGIMLYDMVASVSVSCIG
KNLLIDPVSEEESHQDGALMITCMPSHNEVTQMTVTGEWSTAKINEAMQLCLDACSKLGK
VMRSCLKEAASAPQD
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaaccaggtgctgcggctccgacatattcaccatcgaccggtcaccggaag
aagaggcccacgatccaaaccgactctgaatgggtccgacctgacggccgcagccttcac
cagtgccgccctgcatttttgaagaccggggcagtgaattcttcctcagggtctgcgtat
gcagagttcggaagcaccaaggtcattgtatctgtatttggccccagggaaagtaagaaa
gctatgatgtatagtaatgctggacggttgaattgtaatgtcagttatacaacttttgct
tctcctgtccgtggtcagactccagaaaccaaggatatttcggcaatgctccacaaagct
ctggagggcgccattatactaaaatctttccctaagactactgttgatgtcttcgctttg
gtattggaatctggaggaagtgatcttccggtaatcacgtcgtgtgccagtcttgctctt
gcggatgcaggcatcatgttgtatgacatggttgcctctgtttctgtgtcatgtattggg
aagaatcttctcattgaccctgtatcagaagaagaaagccatcaagacggggctcttatg
atcacttgcatgccatcgcataatgaggtcacacagatgactgtcactggggagtggtcg
acagctaagatcaatgaggcaatgcagttatgcctcgatgcttgttcgaagctggggaag
gtcatgagatcatgtcttaaagaagctgcttctgctccacaggattag
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