Salvia splendens (scarlet sage): 121742995
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Entry
121742995 CDS
T07627
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121742995
09123 Folding, sorting and degradation
03018 RNA degradation
121742995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121742995
03041 Spliceosome [BR:
sspl03041
]
121742995
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121742995
mRNA degradation factors
5'-3' decay
Lsm complex
121742995
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121742995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121742995
NCBI-ProteinID:
XP_041992093
LinkDB
All DBs
Position
8:complement(6937330..6939710)
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AA seq
148 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
VRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGGREEGPKPKGVGRGLEDGG
GRGAGAARGRGGVGGRAAGNRGGGRGGR
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgttgctcaagtctgcacaaggacaccctatgttggtggaactgaaa
aatggggagacatacaatggtcacttggttaactgcgacacttggatgaacatccatctc
cgtgaagttatctgtacctcaaaggacggagataggttttggaggatgccagagtgctat
gttaggggcaacacaatcaagtatctcagagttccggatgaggtgattgataaagttcaa
gaagagacaaaaagccgttctgacagaaggccacctggagtagggcgtggaagaggaaga
ggtgggagagaagaaggccctaaaccaaaaggtgtgggccgtggtttggaggatggagga
ggccggggtgcaggtgctgctcgaggcaggggtggagttggaggaagagctgctggaaac
agaggcggtggtcgaggaggccgatga
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