Salvia splendens (scarlet sage): 121743028
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Entry
121743028 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121743028
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121743028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sspl03000
]
121743028
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121743028
04121 Ubiquitin system [BR:
sspl04121
]
121743028
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121743028
Transcription factors [BR:
sspl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121743028
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121743028
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121743028
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121743028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
RBD_DGKtheta
Beta-sol_PIC_HAP1_IgA0_2nd
zf-UDP
zf-RING_2
FYVE
Motif
Other DBs
NCBI-GeneID:
121743028
NCBI-ProteinID:
XP_041992142
LinkDB
All DBs
Position
8:8437520..8445913
Genome browser
AA seq
1002 aa
AA seq
DB search
MPTMSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACR
TAYNKEKIVGTTAKCERLVSEMSVEKKVKSQKGKSKALEGRKQLGSVRVIQRNLVYVVGL
PLNFADDDLLQRREYFGQYGKVLKVSISRTATGTIQQFANSTCSVYITYSKEEEAVRCIQ
LVHGFALDGKPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGSQDDSFTKDEVISEHTR
SRIQQVTSSSSSIQRRSGNVLPPPGDDYCNNNSSTSSVKPLAKTAINTNNSVPSTRNSPP
STSSGISAALPAGASWGIRPSGNQSLLTSTSSSIKAPNQKNDTCNGPAAFSKSAPSQVSS
LQNGTGKKRVPNEGSTISLEKSKTETSGPVKKEANTDGSVVSDTSFTPACITSVPLSSQC
HSPPRTRSLLNTSNIVDSSASSNGLVSDKDPMDYIDNNMENVCSDVLSLSIQENQHSQNN
NVEQIRESSVCETSGEVKNNTDVVHIGSVQSDSRLGRPDEVTKIDLPELDNDLLSFHSPR
IKDPEIASSRTQDIFDALNLKRSDFLSPAFDNANGLTGIGFNSQAVHKSGNLMVSSSNSP
SVFLENTFNNGAENSTLSLRKENMSQLARYETEVGSGVPAIDTAERSIISNILSLDFDSW
DESVSSPQNLAKLISETDKRQGSFGAPGSWKTQNSSQSRFTFAREEEAMSHLPEQSIDYH
EQALKQHLFGHNFSGSNRFHVEKFVSTNGLPVSSGTEQDYFANNVSHYSSNKLPISRPHV
SAPPGFSAPSRAAAPPGFTSHARTEQFFESHSGNHALEATSLLRNQYQTAPSGDTYSNGD
IEFMDPAILAVGKGTFASGINNMGLDIRSNFSPQFNTYDEVRFQSILQRSFPPQHNQRFG
DLGNNLSTLGDIHGIPSRVAEQTLTNNHSPFSQFSLHQYRNGATSNGQWDGWNESQSRNN
LSIDELLRAERLRLSSNIYGGYEESKMRMPGSGNIYNGAYGI
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccatgagcgacgaaggagagaagacttgccccctctgtgctgaggagatggat
ttaaccgatcagcagttgaagccttgcaagtgtggctatgagatttgtgtttggtgttgg
catcatattatggatatggctgagaaagatgagactgaagggcgctgtccagcatgtcgt
actgcttataacaaagaaaagattgttggaacaactgcaaaatgtgaaagactggtgtca
gagatgagtgtggagaaaaaggtgaagtcacagaagggaaagagcaaagccttggaagga
cggaagcaacttggcagtgtacgagtcattcagaggaatcttgtgtatgttgtgggtctg
ccactgaattttgcagatgatgatctacttcagcgcagagaatattttggtcagtatggg
aaggtgctgaaggtgtcaatatctcgaacagcgactgggactatacaacagtttgcaaat
agtacatgcagtgtatatataacatattcaaaggaggaggaggcagtccgatgtattcag
ctggtacatggatttgctctggatggtaaacctttgagggcatgctttgggaccacaaaa
tactgtcatgcatggctgagaaatatgccttgcagcaatccagattgtctgtatttgcat
gatattggctcacaagatgatagttttacgaaggatgaagtcatatctgaacacacaagg
agtagaattcaacaagtcaccagttcctcaagcagtatccaacggcgttcaggaaatgta
ttacctcctccaggagatgattactgcaataataacagctcgacttcttcggtgaagcct
ttggctaaaactgctattaatacaaataattcagtaccgagtactagaaattctccacca
agtactagctcagggatatctgctgctctaccagctggagcgtcatggggcatacgtcca
tctggtaatcaatctttgctgacaagcacatcgagttccatcaaagcacccaatcagaaa
aatgatacgtgtaatggtcccgcagcattttctaaatcagccccaagtcaagtttcttca
cttcagaatggcactgggaagaaaagggtgcccaatgaaggaagcaccatttctctcgag
aaaagtaaaacagaaacttctgggccagtaaaaaaggaagcaaatacagatggaagtgtt
gtttctgacacttcctttacacctgcatgcatcaccagtgtgcccttgagcagccagtgt
catagcccacctagaacgagatcacttctaaatacttctaatatagttgattcttctgct
tcatctaacggacttgtatcagataaagatcctatggactacatagacaataacatggag
aatgtgtgctctgatgtattatcattgagcattcaagaaaatcaacattcacaaaataac
aatgtggagcaaattagagaatcatcagtttgtgagacttctggagaagttaagaataac
actgatgtggtacacattggaagtgtccagtctgattctagattgggaaggcctgatgaa
gtaactaaaatcgacttgcctgaactggacaatgatttgttatcttttcatagcccgagg
attaaggatcctgagattgcttccagtagaacacaagatatttttgatgcacttaatctt
aaacgttctgattttctttctcctgcatttgacaatgctaatggtttaactggcattggt
tttaatagccaggctgtgcataaaagtggtaacttgatggtttcaagttctaattctcca
agtgtgtttctggagaatacattcaataatggtgctgaaaattccactttgtctctgaga
aaagagaacatgtctcagcttgcgagatatgaaactgaagtaggcagtggtgttccggct
attgatacggcggagagaagcatcatatcaaatattttgtcactggacttcgactcatgg
gatgagtctgtaagttcacctcagaacctggctaagttgataagtgaaactgataaacgg
caggggtcttttggagcaccagggtcctggaaaactcagaatagcagtcaatcaagattt
acatttgctagagaggaggaagctatgagccatttgcccgaacaatctattgattaccat
gaacaagccttgaagcagcatctttttggccataatttctcaggcagcaacagattccat
gttgagaagtttgttagtactaacggtttacctgtttccagtggcacagaacaagattat
tttgctaacaatgtttctcattattcttccaacaagcttcctatttcaagacctcatgta
tctgcacctccaggattttcagcgcctagtagggcagcagcacctccaggctttacttct
cacgctcggacagagcaattttttgaatcacactctggaaatcatgcgcttgaggctacc
tctttattaagaaatcagtatcaaacagccccaagtggtgatacttattctaatggtgat
atagaatttatggatcctgcaattttggctgttggcaaagggacatttgcaagtggcatc
aacaatatgggcctagacataagatccaatttttctccacagttcaatacatatgatgag
gtcagattccagtcaattttacaaagatcttttcctccacaacacaaccaaagatttggt
gacctgggcaacaatctttcgacccttggtgatattcatggaattccttctagggttgcc
gagcagacactaaccaataatcactctccattttctcaattcagccttcatcagtataga
aatggagcaacttctaatggtcaatgggatgggtggaatgaatcccagagtaggaataat
ttgagtatagatgaactgctcagagccgagcgtttgagacttagcagcaatatatacggt
ggctatgaagaatccaagatgaggatgccaggttccggcaatatatacaatggagcttat
gggatttga
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integrated database retrieval system
