Salvia splendens (scarlet sage): 121743114
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Entry
121743114 CDS
T07627
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121743114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121743114
03036 Chromosome and associated proteins [BR:
sspl03036
]
121743114
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121743114
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121743114
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
121743114
Noncanonical PRC1 (PRC1.1)
121743114
Noncanonical PRC1 (PRC1.3/1.5)
121743114
Noncanonical PRC1 (PRC1.6)
121743114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
RAWUL
zf-C3HC4_4
zf-rbx1
zf-RING_6
DUF7044
zf-UDP
zf-RING_4
zf-Nse
zf-C3HC4_5
zf-RING_10
zf-RING_11
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
121743114
NCBI-ProteinID:
XP_041992235
LinkDB
All DBs
Position
8:30438511..30442806
Genome browser
AA seq
447 aa
AA seq
DB search
MPAQKRPTETITPPPSPPLPLEEEKPEDSLQESENHNQEQTVNSSDSDESSDSSDAEKDE
FITVKLGEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS
RRSLRDDPNYDALIATLYPDIDKYEEEELAFHEEENARNKQIQASISQTFRRQAEALGKK
RTSARVTAAAFVRRQGNYRNLRGRRNRTADHQGSDEEDGTNGNDGSKDSSSADERSPDIK
SKRYKRRRGTRTSQTSGANADGGSDDNNSETNRELLSASAGIIGGTEVFAWGRGGVRSNG
RHGGHCWDNIKLSRNNRLSKLVDHLQSSKENEELKVSLTLVSLLEDKMPSLKRPYLCCSP
RSSVRHLCQYVAMQTSTEANEIEILIIKDFHPVNNSSSVKSEPGILNTCHNELQLLNENQ
TLGEIHGSFTQQNLVIAYRQKVQGACN
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccaaaagcgtccgaccgagaccatcactccgcctccttctcctccgctaccg
ctcgaggaagaaaaacccgaagattcgctccaggaaagcgagaatcacaaccaagagcag
accgtgaactctagcgattccgacgagagctctgactctagtgatgcagaaaaagacgaa
tttattacggtgaagttgggagaaatacgcaaggaagtgcagtgccctatatgtttaggt
ataattaggaagacaaggacagtcatggaatgcttacatcgtttctgcagagaatgcatt
gacaaatccatgcgcttaggcaacaacgaatgtccagcttgccgcacacattgtgctagc
cgcagatccttgagagatgatccgaattatgatgccctaattgccactctgtatcctgat
attgataaatatgaggaggaggaattggctttccatgaggaggagaatgctcgcaataag
cagatacaagcttctatttcccaaacatttcgtcggcaagctgaagcactaggaaagaag
cgaacatcagccagagttacagcagcagcgtttgtcaggcgacagggcaactatcgaaat
ttgagaggccggcgaaatcggacagctgatcaccaaggatctgatgaagaggatggaact
aatggaaatgatggtagcaaagactcgtcatcagctgatgaacgctctccagacatcaaa
tctaagagatataaaagacggcgtggaactcggacttcacaaacatcaggagcaaatgca
gatggaggttctgatgataataattctgaaaccaacagagaattattaagtgcttcagct
ggaattattggaggtacagaagtttttgcctggggacgaggtggcgtgcgcagtaatggc
cggcatggtggtcattgttgggacaacatcaaactttccaggaataaccggctttcaaag
ctagttgatcatctccaatcttcaaaggaaaatgaagagttgaaagtaagtctgacactt
gtgtcattgcttgaggacaaaatgcccagcctgaagcgaccttacctctgctgcagtcct
cgttcatcagttagacacttatgccagtatgttgctatgcagacatccactgaagctaat
gagattgagatactaataattaaagattttcatcctgtaaacaactcttcaagtgtcaaa
agtgagcctggcattctcaatacttgccacaatgagttgcagcttttgaacgagaatcag
acattgggggaaattcatggcagttttactcagcagaatctggttattgcataccggcag
aaggtgcaaggcgcatgtaattga
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