Salvia splendens (scarlet sage): 121743666
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Entry
121743666 CDS
T07627
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121743666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121743666
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121743666
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121743666
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121743666
NCBI-ProteinID:
XP_041992931
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All DBs
Position
8:complement(1735846..1742067)
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AA seq
281 aa
AA seq
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MVSDKPIKIREVWAHNLESEFDLISDLIDQFPFISMDTEFPGVIFKPPQSGRRRPRYPLP
PPTRPSPADHYKLLKSNVDALSLIQLGITLSGAAGDLPDLGGADRFIWQFNFSDFDAARD
PHAPESVELLRAHGIDFDRNRVEGIDSARFAELMMGSGLVCSDAVSWVTFHSAYDFGYLM
KVLTGGRPLPARLGEFAAALRAFFGCNVYDVKYLMRFCESLYGGLDRVARALDVDRVVGK
CHQAGSDSLLTWHAFQRMRDLYFVERQHEKYAGVLYGLEVY
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggtttccgacaaacctataaagatccgagaagtgtgggcccacaacctggaatccgaa
ttcgacctcatctccgacctcatcgaccaattccccttcatttccatggacaccgagttc
cccggcgtcatcttcaaaccgccgcaatccggccgccgccgccctaggtatcctcttcct
cctccaacacgcccctccccggccgaccactacaagctgctgaagtccaacgtcgacgcg
ctcagcctcatccagctcggcatcaccctctccggcgccgccggcgatctccccgacctc
ggcggcgccgaccgcttcatctggcagttcaacttctccgacttcgacgcggcgcgtgac
ccccacgcgccagagtcggtcgagctgctccgggcccacgggatcgacttcgaccggaac
cgggtcgaggggatcgactcggcccggttcgcggagctcatgatggggtccggtctggtc
tgcagcgacgcggtgagctgggtcacgttccacagcgcgtacgacttcgggtacctgatg
aaggtcctcacgggcgggcgcccgctcccggcccggctcggggagtttgcggccgcgctg
agggccttcttcgggtgcaacgtgtacgatgtgaagtacttgatgcggttttgtgagagc
ctatatggcggtttggaccgggtggcccgggcgctggatgtggaccgggtggtcgggaag
tgccaccaggccggttcggatagtttgctgacgtggcacgcgtttcagaggatgagggat
ttgtattttgtggagaggcagcatgagaagtatgctggggtgctctatggattagaagtg
tattga
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