Salvia splendens (scarlet sage): 121744444
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Entry
121744444 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121744444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121744444
03012 Translation factors [BR:
sspl03012
]
121744444
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121744444
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121744444
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121744444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
Ank_2
Ank_5
AAA_22
WHD_HA2
ATPase
AAA_19
nSTAND3
Ank
Rad17
Ank_3
ABC_tran
Ank_4
AAA_7
NACHT
Sigma54_activat
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-GeneID:
121744444
NCBI-ProteinID:
XP_041993918
LinkDB
All DBs
Position
8:34404861..34411432
Genome browser
AA seq
1208 aa
AA seq
DB search
MGPPGSSGKEAGRKRQKGRVPPNNMKVAEATRIRIAEILEKFRSSDDEVYKFEENLTNQE
RAAVHVMCRKAGFMSKSHGKGQDRRICIYKRKREVSSMKGRENIASFRFSGESQAALQEL
FSCYPPNDVDMSGNKLGVSKGKSDSGVSRDDFFCRPTTNPSEIASKIQTLASRIEKEMSL
KQIAQNRSKLPIASFRDAITSSVESNQVVLVCGETGCGKTTQVPQFLLDHAWSKGETCKV
VCTQPRRISATSVAERIASERGESIGDSVGYKIRLETKGGRQSSLVFCTNGVLLRVLVNK
DNSRTKKKKASKKGQSSVADITHIIVDEIHERDRFSDFMLAIIRDMLPSHPHLRLVLMSA
TIDADRFSKYFGGCPVIRVPGFTYPVKSYYLEDVLALVRSSEHNHVKCTSGDVAVKDSPL
TEECRVSLDEAIELASSNDDFDPLLELISSQGDSRVFNYQHSKTGVTPLMVSAEQGRVSY
VCTLLSFGVDCDLRSNAGKTALDYAEQGNQGDVAEIIKKHMGKAFTQSDKEQDLLDKYLS
HVDPELIDCLLIEQLLRRICNDSTDGAVLVFLPGWDDINRTREKLLSSPYFKDPSKFLVI
ALHSMVPLVEQKKVFKRPPPGCRKIVLSTNIAETSVTIDDVVYVIDSGRMKEKSYDPYNN
VSTLHSSWISKASAKQREGRAGRCQAGICYHLYSKFRASSLPEFQVPEIKRMPIEELCLQ
VKLMDPSCKIEEFLQKTLDPPVYETIQNAITVLQDIGALSLEEQLTELGQKLGALPVHPL
TSKMLFFAILLNCLDPALTLACASDCKDPFILPMLPNERKKAQVARLELASLYGGNGDQL
AIIAAFDCWKMAKQRGDEAKFCSQYFVSAATMKLISSMRKKLEGELLRHGFIPEDASRCS
LNARDPGILHAVVFSGLYPMVGRVIPQGNRSLVETASGNKVRLHQFSTNGKLSSKKFSIP
PLIMFDEITRGDGGIHIRNCCVLGSLPLMLLATDIVVAPTEEDADEGDESDADEPDADND
SDEDDKAEPHSSSKPNSEKILSAPENVVKVVVDRWLPFQLMALDVAQIYCLRERLSSAIL
FKVTKPRDVLPEHLGASLYAIACILSYDGMSGISLPPEPVDTLTTMVSVADISHGRRVPI
NRPAKSYLKSLLYPDHPYPNQSHTSHHHTSHLQKQVSKSAANWSAPQGTSTAKGNYSKRQ
RGNGNGFR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgggcccaccaggttcatccgggaaggaggcggggaggaagcggcagaaagggagagtg
ccgccaaacaatatgaaggttgccgaggccacccgcattcgcatcgctgagattctggag
aagttccggagttcagatgatgaagtatacaaatttgaagagaacctgactaatcaggag
cgggcggcagtgcacgttatgtgcagaaaggcggggttcatgtcaaagagtcacgggaaa
ggacaggatcgccgcatttgtatctataagcgtaaaagggaagtcagcagtatgaaaggg
agagagaacattgcttctttcagattttcaggggaatcacaggccgctttacaggaattg
ttttcttgctatccccctaatgatgtggatatgagtgggaataaacttggcgtcagtaag
ggaaaaagtgatagcggagtctcaagagacgattttttttgcagacctacgacgaatcca
tctgaaattgcaagcaagatacaaacacttgcttcccgaattgagaaagagatgagcttg
aaacagatcgcacagaacaggtccaagctacctattgcatcttttagggatgctatcaca
tcttcagtagaatctaaccaggttgtgcttgtatgtggtgaaactggatgtgggaaaaca
acacaggtcccccagtttctcctggaccatgcatggagtaaaggagagacgtgtaaagtt
gtttgtactcagccgaggcgaatctctgccacatcagtcgctgaaagaattgcttctgaa
agaggtgaaagtattggagattctgttggatacaagattcgactggaaaccaaaggtgga
aggcagtcctctcttgtgttctgcaccaatggggttctgctgagggttctagtcaataaa
gataacagccgtacaaagaaaaaaaaggcgtctaaaaaaggacagagttctgtggctgat
ataacccacataatagtggatgaaattcatgaaagggatcgcttctccgatttcatgctc
gcaataatcagagacatgcttccttcgcatcctcacctgcgtctggtattgatgagcgcc
accattgatgcggaccggttttcaaagtactttggaggctgcccagttattcgtgtaccg
ggttttacatatcccgtaaaaagttattacttggaggatgtactagcacttgtgagatca
tctgaacataatcacgttaagtgcacaagtggggacgtggcagtgaaggactctccttta
accgaggaatgccgagtttctcttgacgaggctattgaattagcttcatcaaacgatgac
tttgatccccttctcgagctgatatcttcccaaggagattcgagagttttcaattaccag
cactcgaaaaccggagtaacccccttgatggtgtcagccgagcaaggaagagttagctat
gtttgcacacttctctcgtttggtgtagactgcgacttgcggagtaatgcagggaagaca
gctctcgattatgctgaacaaggaaatcagggggatgttgccgaaatcattaaaaaacac
atggggaaagcatttacgcagtcagataaggagcaagatttactcgataaatacttatcg
catgttgaccctgaacttatagattgtctgcttatcgaacaacttcttaggcgaatctgt
aatgactcgactgatggagctgttctcgtatttcttccgggttgggatgatataaacaga
acgcgagagaagttgctatcaagtccttatttcaaggatccatcaaaatttcttgttatt
gctcttcattctatggttccattggtcgagcaaaagaaagttttcaaacgtccgcctcct
ggatgccgcaaaattgttctttctactaatattgccgaaacatcagtcaccatcgatgat
gttgtttatgtcatagacagcgggcggatgaaagagaaaagttatgacccatataacaac
gtgtcaactcttcattcttcttggatatcaaaggcaagtgctaagcaacgagaaggtcgt
gcagggcgatgtcaagctggtatttgttatcatctatattcaaaattccgagcttcttct
cttccagagttccaagttcccgagataaagaggatgcctatagaagagctgtgcctgcag
gtgaagcttatggatccatcttgcaaaatcgaagaatttttgcagaagacgctggacccg
cctgtttatgagacgatacaaaatgcaataacggttcttcaggatatcggtgcattgtct
ctagaagagcaactcacggaacttgggcagaaactcggagctctacccgtccaccctctg
accagcaaaatgttattttttgcgatattgttgaattgccttgacccggcattgacttta
gcttgcgcttccgactgcaaagaccccttcattttgccaatgcttcctaatgaaaggaaa
aaagctcaagtggctagactagaactggcctcactctatggtggcaacggtgaccagtta
gctataattgctgcctttgattgctggaaaatggctaaacaaaggggcgacgaagcgaag
ttttgttctcagtacttcgtatctgcagcgaccatgaagttgatttcgagcatgcggaag
aaactcgaaggcgaactacttcggcatggttttatcccggaagatgcctcccgctgtagc
ctcaacgcccgtgaccctggtatactccatgctgtagttttctcaggtctatatccgatg
gtcgggagggttattccgcaaggtaatagatctcttgtcgaaactgccagcgggaataag
gtaaggttgcaccagttttcgaccaacgggaagctctcctcgaagaaattcagtatcccg
cctttgatcatgtttgatgagataacccgtggagacggcggaatacatattaggaactgc
tgtgtcctaggttcgctccccttaatgttgttagccactgatattgtcgtggccccgact
gaggaagatgctgatgagggtgatgagagtgatgctgatgaacctgatgccgacaatgac
agtgacgaggatgataaagcagagcctcacagttcatcgaaacccaacagcgaaaagatc
ttgtcggcgccagagaatgtcgttaaagtcgtagtggatcgatggctgccgtttcagttg
atggctctagatgttgctcagatatactgcttgagggagagactatcttcagcaatcttg
ttcaaggtaactaaaccgagggacgttcttccggaacatcttggtgcctcactgtatgca
atagcctgtatcctctcttacgatgggatgtccgggatctcgctgccaccagaacccgta
gacaccctcaccacgatggtcagtgtcgctgacatcagccatggtaggagggtgccaatc
aatcgcccagctaagagctatctcaaatcgcttctttaccctgaccacccctatccaaac
cagagccacacgtcacaccatcacacaagccatcttcagaagcaagtgtcaaaaagcgct
gcgaactggtcggccccacaagggactagtaccgcgaaggggaactactccaagcggcag
cgtggcaatggtaatggattcaggtga
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