Salvia splendens (scarlet sage): 121744741
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Entry
121744741 CDS
T07627
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121744741
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121744741
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Complex C specific factors
121744741
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
AAA_30
Cas3-like_C_2
AAA_16
T2SSE
AAA_7
SRP54
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
121744741
NCBI-ProteinID:
XP_041994291
LinkDB
All DBs
Position
8:30912351..30921265
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AA seq
694 aa
AA seq
DB search
MSTFWKPGTEKPRFVEDEEGGVLFYTSASSSSSGHGYASVERQRQRLPVYKNRTAILYLV
ETHATTIVVGETGSGKTTQIPQFLKEAGWADSGRMIACTQPRRLAVQSVASRVAEEMGVK
LGEEVGYTIRFEDITDAELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRLIISSATIEAKSMAAFFNSSRRLQGRDVEGQGPKKESAILSVEG
RGFNVQTFYVEEPVSDYIRAAVSTILSIHDKEPMGDILVFLTGKDDIDAAMQLLAEDSHH
RNQGLIVLPLYSGLPRADQDLVFSPTPRGKRKVIISTNIAETSLTLEGVVYVVDCGFSKQ
RFYNPITDIENLVVAPISMDSARQRAGRAGRVRPGKCYRLYTEEYYVNEMSSDGVPEIQR
SNLVSCVIQLKALGIDNILGFDWPSSPSPEALIRALEVLYSLGVIDDDAKLTSPTGFQIA
EIPLDPMVSKMILASNDLGCSEEAITIAAVLSLQSIWYSTRGSEKELDEAKLRFAAAEGD
HVTFLNVYRGYVESNKSSSWCHRNHINYHAMKKVDDVRKQLRRIAQRLGISLKSCDHDMQ
AVRKAVTAGFFSNACRIEAFSHNGAYKTIRGSQEVYIHPSSVLFRVNPKWVIYHSIVSTE
RQYMRNVITIEPSWLPEAAPHFYHRQQLDPRLHS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacattctggaagccgggaactgagaaacctcgattcgtcgaggatgaagaaggc
ggcgttttgttctacacctccgcttcatcttcttcgtcagggcatgggtacgcgagtgtg
gagcgacagaggcagaggctcccagtttacaagaacaggactgccattttgtatttagtg
gagacgcacgccaccacaatcgtcgtcggagaaactggcagtggaaaaactactcaaatc
cctcagttcttgaaagaagctggatgggcggacagtggtcggatgatagcctgcacgcaa
ccaaggcgattggctgttcagtcagtcgcttcaagagttgctgaagagatgggcgttaaa
cttggggaagaagttggttacacaattcgctttgaagatattacagacgctgaactaaca
cgtgtaaaatttctcactgatggagtcttgctaagggaaatgatggacgatcctctatta
agcaagtatagtgttatcatggtagatgaagctcatgaacggtctctttcaactgacatt
ttgttaggtctcctgaaaaagattcaacggcgtcggcctgagcttcgcctcatcatctca
tctgctacgattgaggctaaatcaatggctgccttctttaatagcagccgaaggcttcaa
ggacgagatgttgaaggacaaggaccgaagaaagagtctgctattctctctgttgagggt
agaggattcaatgtgcaaaccttttatgttgaggagccggtttcagattatattcgagct
gcagtttcgaccatactttctattcatgacaaggagccaatgggagacattcttgtattt
cttactggtaaagatgatattgatgctgcaatgcagttgcttgcggaagattctcatcac
agaaaccaaggactgattgttttacctctgtattctggactgccgcgtgctgatcaggat
cttgtgttttctcctactcctcgcgggaagagaaaagtgataatatcgacaaatatagca
gagacatccttaacgttggagggcgttgtctatgttgttgactgtgggttctcaaaacaa
cggttctataatcctataactgatattgaaaatctggtcgtggctccaatatcaatggat
tcagcccgacaacgggctggaagggctggaagagttagaccaggaaagtgttacaggctc
tacactgaagaatattatgtaaatgagatgtcttctgatggtgttccggagatacagcgg
tcaaaccttgtttcgtgtgttattcagttaaaagcattagggatagacaatattttggga
ttcgactggccatcatcaccatcgcctgaagcactgatcagagcacttgaagtgttgtat
tctcttggagttattgatgacgatgcaaaacttacatctcctactggattccaaattgct
gaaattccactagatccgatggtttcaaaaatgattttagcttcaaatgatcttggctgt
tcagaagaagccatcactattgctgctgtgttgtccttacagtcgatctggtattcaacc
aggggatcagaaaaggaattggatgaggccaagttgagatttgctgctgctgagggagac
catgttaccttcttaaatgtgtatagaggatatgttgagtctaataaatcctcgagttgg
tgtcacaggaaccacataaactaccatgcaatgaaaaaagttgacgacgttcgaaaacag
ttgagaagaatagcacaacgtttgggcatatcccttaaatcttgtgaccacgatatgcag
gctgtgaggaaggcagttactgctggatttttctcaaatgcttgtcgcatcgaagccttc
agccataatggcgcatacaaaactatacgaggttcccaagaagtctatattcacccttcg
tctgtattattcagagtgaatccaaagtgggtgatctaccattctattgtctcgactgag
cgtcagtacatgcgcaatgtcatcactatagaaccctcgtggctgccagaggctgctccg
cacttctaccaccgccaacagcttgatcctagattgcattcctaa
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