Salvia splendens (scarlet sage): 121744753
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Entry
121744753 CDS
T07627
Name
(RefSeq) DNA damage-binding protein 1-like isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03420
Nucleotide excision repair
sspl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121744753
09124 Replication and repair
03420 Nucleotide excision repair
121744753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121744753
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121744753
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
121744753
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121744753
TCR (transcription coupled repair) factors
Cul4-CSA complex
121744753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
121744753
NCBI-ProteinID:
XP_041994309
LinkDB
All DBs
Position
8:32192768..32200925
Genome browser
AA seq
1088 aa
AA seq
DB search
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG
RIATLELFRPHGETQDLLFIATERYKFCVLQWAETGEVITRAMGDVSDRIGRPTDNGQIG
IVDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVLY
QDNKDARHIKTYEVNLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYSS
AQAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIELLGETS
IASSISYLDNAIVFVGSSYGDSQLIKLNLQPDAKGFYVEVLERYVNLGPIVDFCVVDLER
QGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSF
INETRILAMNIEDELEETEIEGFCSNVQTLFCHDAAYDQLVQVTSSTVRLVSSTTRELLN
EWFAPEGYSINVATANVTQVLLATGGGHLIYLEIGDGVLREVKHIQLEYDISCLDINPIG
DNKNCSQLAAVGMWTDISVRIFSLPDLNLVTKELLGGEIIPRSVLLCAFEGISYLLCALG
DGHLLNFVLNTSNGELTDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKLL
YSNVNLKEVSYMCPFNTAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQ
EQTRTFAICSLKYNQSAADDSEMHFVRLLDDQTFDFISTYPLDQFECGCSVLSCSFSDDP
NVYYCVGTAYVMPEENEPTKGRVLVFTVEDGKLQLISEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMRRDDGTHELQSECGHHGHILALYVQTSGDFIVVGDLMKSMSLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG
EFVNRFRHGSLVMQLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYALLEKLQMNLRKVI
KGVGGLSHEQWRSFYNEKKTVEAKSFLDGDLIESFLDLNRNKMEEISKSMNVPVEELMKR
VEELTRLH
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatggaattacgtggtgacagcgcacaagcctaccaacgtcacgcattcgtgc
gtcggcaatttcaccagcccgcaggagctcaatcttatcattgcgaaatgcactcggata
gagattcatttgctctcgcctcaaggcttacagcctatgttggatgtgccgatatatggg
agaattgccactctcgagctttttcgcccacatggagaaacacaagatctccttttcata
gctacagaaagatataaattctgcgttttgcaatgggccgagactggcgaggttatcaca
agggccatgggtgatgtttccgatcggattggtcgacccacagataatggacagattgga
atagttgatccagattgcaggttgattggtcttcatctatatgatgggttgttcaaggtc
atcccatttgacaataaaggccaactcaaagaggcatttaatatcaggctcgaggagctt
caggttttagatatcaagtttttgtatggttgccctaagccgaccattgttgtactttac
caggataacaaggatgctcgtcacattaaaacatatgaagttaatttgaaggataaagat
tttgttgaaggtccatggtctcaaaacaatctcgacaatggggcggatttgttaatccca
gtgccacctcctctctgtggtgtcctcattatcggtgaagaaacaatcgtgtatagcagt
gcccaggctttcaaagcaatcccaattagaccttctattacaagagcctatggaagggtt
gatgcagacggttcacgctacttgttgggagatcataatggacttttgcatctacttgtt
ataactcatgaaaaggagaaagtaactggacttaaaattgagctcttgggggaaacatct
attgcatcgtccatatcatatcttgataatgccattgtttttgttggctcaagttatgga
gattcacagctcataaagcttaatcttcaaccggatgcgaagggtttttatgtggaagtt
cttgaaagatatgtcaatttggggccaattgttgatttctgcgtggttgacttggagagg
caaggccaaggtcaagttgtaacttgctcaggtgcctataaggatggttctttacgcatt
gtgcgaaatggtatcggaataaatgaacaggcatcggtagagcttcaaggcatcaaaggc
atgtggtcgctgcgatcagctactgatgatccatatgacactttcttagttgtcagcttt
atcaatgagacacgtattttggcaatgaatattgaggatgaattggaggaaactgaaatt
gaaggtttttgttccaatgtacagacactgttttgtcatgatgctgcatacgatcaactt
gttcaggttacttcaagtacagtgagactagttagttctaccaccagagagcttcttaac
gaatggtttgctccggaaggttattcaatcaatgttgccacagccaatgtcactcaggtt
ctattggctactggtggtgggcatttgatttatctagaaattggcgatggtgttctgaga
gaagtgaaacatatccagttggagtacgacatctcatgcctggacatcaatccaattggt
gataacaaaaactgcagtcaactagctgcagttggaatgtggacggatattagtgttagg
atattttcacttccagacttgaaccttgtaacaaaggagcttttgggaggggagatcatt
cctcgttctgtacttttgtgtgcttttgaagggatttcttatctgttatgtgctcttggg
gatggacacctgttgaattttgtgttgaataccagcaatggcgagctgacagacaggaag
aaagtttctttagggacccaaccaattacactacgtactttctcatcaaagaatgccaca
catgtatttgctgcttctgatagaccgactgtcatttatagcagtaacaagaaattgctt
tatagcaatgtaaatctgaaagaagttagttatatgtgccccttcaacacagctgctttc
ccggatagccttgctattgctaaagaaggcgaactaacaattggaaccatagatgatatt
caaaagcttcacatacgctcgatcccacttggggagcatgcacggcgtatatgtcatcag
gaacaaacacggacatttgccatttgtagtttaaaatataaccagtcagctgcagatgac
tctgaaatgcactttgtccgcctgttagatgaccagacatttgacttcatatctacctat
ccactggatcaatttgaatgtggttgttctgtccttagctgctcattctctgatgaccct
aatgtctactactgcgtggggactgcatatgtaatgccggaagaaaatgaacctactaag
ggtcgggttttagtttttactgtagaagatggtaaactccaactaatttctgagaaggaa
accaaaggcgctgtttattctcttaatgccttcaacgggaaactgcttgcggccattaat
caaaagattcagctgtataagtggatgcgacgggatgatggcactcatgaattgcaatct
gaatgcggacatcatggccacatacttgccctttatgtacaaactagtggggatttcatt
gtagttggtgatctgatgaaatcaatgtcgttgctgatttacaagcatgaggagggtgct
atcgaggagcgagctcgtgactacaacgccaattggatgtcagctgttgagattctggac
gatgacatttaccttggagcagagaataatttcaatctcttcactgtccgtaaaaacagt
gaaggagcaactgacgaggagcgtgggcgcctcgaggttgttggcgaataccaccttggc
gaattcgtcaatcgtttccgacacggttcactagtcatgcagctaccagattccgacgtt
ggccaaatcccaacagtcatattcggcactgtcaatggagtgatcggggtcattgcctct
ctcccccatgatcagtacgccctcttggagaagctgcagatgaatctgcggaaagtgatc
aagggcgtggggggcctcagccacgagcagtggagatccttctacaacgagaagaagacc
gttgaagctaaaagcttcttagacggagatttgatcgaatcattccttgatctcaacaga
aataagatggaggagatttcaaagtcgatgaatgttcctgtggaagaacttatgaagaga
gtggaagagctgactaggttacattaa
DBGET
integrated database retrieval system
