Salvia splendens (scarlet sage): 121744826
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Entry
121744826 CDS
T07627
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121744826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sspl04131
]
121744826
Membrane trafficking [BR:
sspl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121744826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
zf-RING_Vps41
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
zf-RING_2
WDR55
WD40_Prp19
zf_RING_Vps8
Beta-prop_EML_2
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_IP5PC_F
PEP5_VPS11_N
Vps39_1
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
121744826
NCBI-ProteinID:
XP_041994419
LinkDB
All DBs
Position
8:5430967..5439738
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AA seq
944 aa
AA seq
DB search
MWAKENGIEGDDEREEESEEDNSDEEEEEEPRLKYQRMGGSVPTLLQSDAASCIAVSERM
IALGTHSGSVHILDFLGNQVKEFIAHTAAVNDLCFDIEGEYIGSCSDDGSVVINSLFTEE
RLKFEYHRPMKAIALDPDYVRKASRRFVTGGLAGHLYYNVKKWIGYRDQVLHSGEGPIHS
VKWRNSLIAWANDAGVKVYDAANDQRLTFIERPRGSPRPELLLPHLAWQDDNLLVIGWGT
SIKIVSIRNNQNIANDTCKNLQISSLNKVDIVASFQTSYFISGIAPFGDSLVILAYVPVE
EDGEKDFSSATPSRQGNAQRPEVRVVTRNNDELSTDALPIHGFEHYKAKDYSLAHSPFSG
SSYSGGQWAAGSEPLYYIVSPKDVVIAKPRDTEDHISWLLQHGCHEKALAAVEAGQGRSE
LHEEVKLKYLDSLIVEHKYAEAASHCPKLLRGSAAWERWVFHFAHLRQLPVLVPYIPTEN
PRLRDTAYEVALVALATNPSFHKDLLSIIRTWPHNIYSASPVISAIEPQLNTSSSTDALR
EALAELYVIDGQYEKAFSLYADLMKPDLFDFIEKHNLHDGIREKVAQLMMIDCKRAISLF
IHHRDIVSPSDVVSQIVAAKTKCDYRQFLHLYLHSLFESNPHAGRDFHDMQVELYADYDP
KMLLPFLRSSQHYTLEKAHEICVKRGLLKEQVFILGRMGNAKQALTVIINKLGDIEEAIE
FVSNQHDDDLWEELIKQCMNKPEMVGVLLEHTVGNLDPLYIVNRVPNGLEIPRLRDRLVK
IITDYRTETSLRHGCNDILKADCVNLLIKCYKEARRAIYLGNKEDESHSKSNNKNSASQP
AKRSVSVRTTEVKSKSRCGARCCICFDPFSIQDVAIYAFFCCHAYHETCLSDSIVSISRQ
TKPATPPHWNNLQYYSDNGDDNDDDDGSVDDARMRCILCTTAAG
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcgaaggaaaacggaatcgagggcgatgacgagcgagaagaggaatctgaagaa
gacaactccgacgaggaggaggaggaggagccgcgcctcaagtaccagcgtatgggcggc
agcgtccccactctcctacagagcgacgccgcctcgtgcatcgccgtttccgagcgcatg
atcgctctcggcactcactccggctccgtccacattctcgatttcctcgggaatcaagtt
aaagaattcattgctcatactgctgcagttaacgatctgtgcttcgatatcgaaggtgaa
tatattggaagctgctccgatgatggttctgttgtaataaatagtctttttactgaggaa
agattgaaatttgagtatcatcgtcctatgaaggcaattgctttagacccggattacgtg
agaaaagcatccagaagatttgttactggaggtttagctggccatttatattataacgtg
aagaaatggataggttatcgagaccaggtcctgcactctggtgaaggcccaattcattca
gtaaagtggagaaatagtctcatcgcctgggctaatgatgctggtgtaaaagtttatgat
gctgctaatgatcaacgtttaactttcatagaaagaccaagaggaagcccacgtcctgag
ctgctgcttccccatttagcttggcaggatgacaatttgctagtcattggatggggaaca
tctattaaaatagtatcaataagaaacaatcagaatatagctaatgacacttgcaagaat
ttacaaatatctagcttgaacaaggtggatattgtggcgtcttttcaaaccagctatttc
atttctgggattgcaccctttggtgattctttggttattctagcatatgtccctgtggaa
gaagatggggagaaggacttcagcagtgctactccttcacgtcagggaaatgctcagaga
cctgaagtacgagttgtcactcggaacaatgatgaactgtcaactgatgcactgccaata
catggctttgagcattacaaggccaaagattattctcttgcacattctcctttctcaggt
agcagttattcaggtggtcaatgggctgctggaagtgaacccttgtactatattgtttcc
cccaaggatgtagttattgctaagcctagggatactgaagaccatatatcttggctactc
cagcatgggtgtcacgagaaagccttggctgcagttgaagctggtcagggtcgaagtgag
cttcatgaggaggtaaaattaaaatatcttgacagtctcattgtggaacataagtatgct
gaagcggcttctcactgtcccaaactactgcgaggatcagctgcatgggaaaggtgggtt
ttccatttcgctcacctccgtcagcttcctgtattggttccatacataccaacagaaaat
ccaaggttacgcgacactgcttacgaggttgctcttgttgctttggcgacgaatccttca
ttccacaaagatctcctgtctattatcagaacctggccacataatatatattcggcttcg
cctgttatctcagctatagaaccacagctaaatacttcatcatcaactgatgctctcaga
gaggctctggctgagttgtatgtgattgatggacaatatgagaaggcgttcagcttgtat
gccgatcttatgaagccggatttgttcgacttcattgaaaagcacaatttgcatgatggc
attcgtgaaaaggttgcccagctgatgatgatagactgtaaacgtgcaatctcactgttt
atccatcacagggacatcgtaagcccatctgatgtagtttcacaaattgtggctgcaaag
accaagtgtgattaccgacagtttttacatctctacttgcattcattgtttgagtcaaat
cctcatgctgggagggatttccatgacatgcaggttgaactgtatgctgattatgaccca
aaaatgctgcttccctttctacggagtagtcagcattatacattggaaaaggctcatgaa
atttgtgttaaaagaggacttttgaaagagcaagttttcatccttggaagaatgggaaat
gcaaaacaagcattgacagtaatcattaataaattgggtgatatagaagaggccatagaa
tttgtaagtaatcaacacgatgatgacctctgggaagagctgattaagcagtgtatgaac
aaacctgagatggttggggtattattggagcatactgttggcaatcttgatcccctgtat
attgtaaacagggtgcccaatggcttggagatacctcggctgcgagaccgtctggtgaaa
atcatcactgattacaggactgaaacctctctcagacatggatgtaacgatattctgaag
gcagattgcgttaacttgctgatcaagtgctacaaggaagcaaggcgggctatatacttg
ggcaacaaagaagacgagtcccacagcaaaagcaacaataaaaacagtgcctctcagcca
gccaagagatctgtcagcgtcagaaccacagaggtcaagtctaaaagcaggtgtggcgca
aggtgttgcatttgcttcgatccattctccatacaggatgtggcgatatatgctttcttt
tgttgccatgcataccacgagacgtgtctctcggattccatcgtttcgataagcagacaa
acgaagccagcaaccccccctcactggaacaacctccagtattatagtgacaacggtgat
gacaatgatgacgatgatggcagtgtcgatgatgctcggatgcgttgcatcttgtgtaca
actgctgctggttga
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