Salvia splendens (scarlet sage): 121744861
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Entry
121744861 CDS
T07627
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121744861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121744861
03009 Ribosome biogenesis [BR:
sspl03009
]
121744861
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121744861
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 related factors
121744861
Complex B
121744861
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121744861
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
Helicases
121744861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
Flavi_DEAD
AAA_30
AAA_7
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
121744861
NCBI-ProteinID:
XP_041994470
LinkDB
All DBs
Position
8:6664367..6668371
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETAVPRKFPRANGSDRMAAAALPSTINKWNSKPYSQRYYEILEK
RKTLPVWHQKDEFLQVLRANQTLILVGETGSGKTTQIPQFVLDAIELESADKRKKYMVGC
TQPRRVAAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIKTVCQIHLCEPPGDILVFLTGEEEIEDACKKIAK
EIANNGDQVGPVKIVPLYSTLPPAMQQKIFEAAPPPAREGGPAGRKIVISTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSF
HNDLVPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DDGNLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVSAMLSVPNCFVRPRDAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNKEDPQWCYENFVNHRALKSADNVRQQLARIMAR
FNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPNCEAKRQLEKLYKKRENA
KDESRSKK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggcacagagagaaagaggaaggtgagtctatttgacgtagtggacgagaccgccgtg
ccgaggaaatttcccagggccaacggcagcgacagaatggccgcggcggcgctgccctcc
acgattaataaatggaactctaagccttattcgcagagatattatgagattttggagaag
aggaagactctgcccgtgtggcaccagaaggatgagtttttgcaggttcttagagctaat
cagacgcttatccttgtcggtgaaaccggtagtggtaaaacgactcagattcctcagttt
gtgctggatgccatagagctagagtcagctgataagcgcaaaaagtacatggtcggatgt
actcagcctcggagggtggctgctatgtctgtttcaaggagagttgctgaagagatggat
gtggctattggtgaagaagtaggttatagtattcgtttcgaggattgcagcagtgctcga
actgttttgaagtacttgacagatggtatgcttttgagagaagccatgaccgacccactc
ctagagaggtacaaagtgataattcttgatgaggcccatgagaggactttggcaacagat
gtcttatttgggcttctcaaggaggtgttgaaaaataggcctgaccttaaactagttgtc
atgagtgctactcttgaggcggagaagtttcaaggttacttctttggtgcaccactaatg
aaagttcctgggagactgcaccctgtggagattttctatacccaggagcctgagagagat
taccttgaagcagctataaagactgtgtgtcagatacacttgtgtgaacctcctggtgac
attcttgtcttccttaccggtgaagaagaaattgaagatgcttgtaagaaaattgcgaag
gaaatagccaataatggggatcaagttggaccggtgaaaatagtccctttgtactctaca
cttcctccagcaatgcagcagaagatttttgaagctgctccaccaccggcaagggagggt
ggccccgcaggaagaaagattgttatttctaccaatattgctgaaacatctcttacaatt
gatggcatagtttatgtcatagaccctgggtttgcaaaacaaaaagtttataatcctcga
attcgtgttgaatctctcttggtatctcctatatcaaaggctagtgcccatcaacgatct
gggcgtgctggaagaacacagcctggcaagtgctttagactgtacacagaaaggagtttt
cataacgaccttgtaccgcagacatatcccgagatattaaggtcaaatcttgcaaatacc
gttttgactttgaagaagttgggaatagatgatctggtccattttgattttatggaccca
ccagctcctgagacacttatgagagcattggaggtcttgaattacttgggagcccttgat
gatgatgggaacctgaccaagttgggtgagataatgagtgagtttccattggatcctcag
atgtcgaagatgctggttgttagttcagaattcaattgttcaaatgagatcctctcagtg
tctgcaatgctttcagtacccaactgcttcgtccggcctagggatgctcaaaaagctgct
gatgaagcaaaagctcgttttggtcacattgacggagatcatctcacactgttgaatgtg
tatcacgcttacaaacaaaataaggaagatccacaatggtgctacgagaactttgtcaat
catagggctctaaaatcagcggacaatgttagacagcagctagctaggatcatggccaga
ttcaatttgaagctctgtagcacagattttaacagccgtgactactatgtcaatatcagg
aaggctatgcttgctggatacttcatgcaggttgcccatttagagcgcactggccactat
cttactgtgaaagacaaccaagttgttcacctgcacccttcaaattgcctggatcataaa
ccggagtgggttatatataatgaatatgttctcacaagtaggaatttcattcgtaccgtg
acagatattcgtggtgaatggttggttgacattgcaccgcattactatgatctctcaaac
ttccccaactgcgaggcaaagcggcagctggaaaaactgtataagaagagggagaatgca
aaggatgaaagtcgaagtaagaagtga
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