Salvia splendens (scarlet sage): 121744879
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Entry
121744879 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121744879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121744879
03012 Translation factors [BR:
sspl03012
]
121744879
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121744879
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121744879
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121744879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
ATPase
T2SSE
PhoH
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
121744879
NCBI-ProteinID:
XP_041994489
LinkDB
All DBs
Position
8:complement(10315174..10327874)
Genome browser
AA seq
1159 aa
AA seq
DB search
MHSRLKALLARAAIKSAALYSPSHLRNSRVVPIGDYTAVANVVENYVCSKHQSLSRQPLL
SRRRFCGYAAEQFSDDEYECDYENHPPSSSVANIDEWKWKLSMLLQNDKDQEIISRDKRD
KRDFEQISNLAKQMRLYCQLYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVES
LLQEHLDRTSLNSKKACQISNEIESTNPVENVDSAEHADPFLDASVMEKVLQRRSLRLRN
MQRTWQESPEGRRMLDFRKSLPAFREKERLLQAIARNQVVVISGETGCGKTTQLPQYILE
ANIESGRGAFCNIICTQPRRISAITVAERVSAEKGEPLGESIGYKVRLEGMKGKNTHLLF
CTSGILLRRLLSDRNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATL
NADLFSNYFGGAPMIHIPGFTYPVRVCFLEDILEMTGYKITSFNQIDDYGQEKLWKTQKQ
LAPRKRKNQITSLVEEALSKAKFENYSSRVQESLSCWIPDSIGFNLLEAVLCHITRKERP
GAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPTNVRKI
VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIGDFISASLQPPEPLAV
QNAVDFLKMIGALDENENLTHLGKFLSVLPVDPKLGKMLIMGAIYCCFDPILTIVAGLSV
RDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSLQ
TLQAIHSLRKQFTYILKDAGLLDTEGSINNRLSHNQSLVRAVICSGLFPGIVSVVPRETT
MSFKTMDDGPVLLYANSVNARYQTIQYPWLVFGEKVKVNTVFIRDSTGVSDSVLILFGGK
LECGATGGHLKMLEGYVEFFMDPSLAECYLKLKEEADKLLIQKLGHPSMDIHKEGKYLML
AVQELVSGDQCEGMFVFGRDSKKPRESCDKDRFTKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKKNKALAEKDAAIEALAWLTQTSENNHVEDVNSPPDV
TDNMLKLLGRRRRSKRNPR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcattcccggctaaaggcgttacttgcacgggccgccataaaatcagccgctctttat
tctccttcacatttgcggaactcccgagttgtgcctatcggtgactataccgccgttgcc
aatgttgttgagaattatgtttgctccaaacaccaaagcttgagtcgccaacctcttcta
tcgcggcgtaggttctgtggctacgccgctgagcagttctccgacgatgaatatgaatgc
gattacgaaaaccacccaccgtcatcatcagtggcgaatattgatgagtggaaatggaaa
ctcagcatgttgttacaaaatgataaagatcaagagattatttctcgtgataaaagagat
aaacgggactttgaacaaatatccaaccttgccaaacagatgcggctttactgtcagctg
tatgggaaagtgatcgtggccagcaaggttcctcttcccaactacaggccagatctggat
gataagcggcctcagagggaggttgtcatcccattgagcttacaaagaagggttgagagt
ttgcttcaggaacatcttgacagaacaagcttgaactccaaaaaggcctgtcagatttca
aatgaaattgagtctaccaatccagtggaaaatgtcgattcagctgaacatgccgatcca
tttcttgatgcttctgtcatggagaaggttttgcagagacggagcttgcgattgcgtaat
atgcaaagaacttggcaggaatcacctgaaggaagacgaatgctggattttaggaaatcc
ctccctgcatttagggagaaggaaaggctccttcaagcaattgcgaggaatcaggttgtg
gtgatttctggagagactggttgtggtaagaccacgcaactccctcagtatattttggag
gcaaatatagagtctggcaggggagcgttttgtaacataatctgtacacagccccgaaga
atatctgcaattactgttgcagaaagagtttctgcagagaagggagagcctcttggtgaa
tcaattggatataaagtgcgattagagggaatgaaagggaagaatacacatttgcttttc
tgtaccagtggaattttgctccgaaggctcttgagtgatagaaacctggatggtgtaact
catgtttttgttgatgaaattcatgagcgaggcatgaatgaagatttcttgttgattgtc
ttgaaggatcttcttccacgacgaccagatttgagattaatcttgatgagtgccactctg
aatgctgatctattttctaattattttggtggagcacctatgattcatattcctggtttc
acttatcctgtaagggtctgttttctggaagatatacttgaaatgacgggatataagata
acttcgttcaaccaaatagatgattatggccaagagaagctttggaagacacaaaaacaa
cttgcaccacggaaaagaaaaaatcaaattacctctcttgttgaggaagctctgagtaaa
gcaaaatttgaaaactatagctctagagtacaagagtctttatcgtgctggatacccgac
tctattgggtttaatctcttagaggctgtgttgtgccatataactcgcaaggaacgccct
ggggctgtgttagtatttatgactgggtgggaggatattagttgtttgagggatcagtta
aaagctcatcctctcttaggagatccaaatagggtccttctgcttacatgccatggctca
atggcaacttctgaacagaaactcatatttgagaggccacctaccaatgtacggaaaata
gtgcttgctacgaatatggctgaggcaagtattacgatcaatgacatagttttcgttgtt
gattgtggaaaagcaaaggagactacttatgatgctctgaataacacaccgtgtctacta
ccttcatggatatcccaagcttctgctcggcaaagaaggggtagggctggccgtgtacag
ccaggcgagtgctaccacctgtatccacaatgtgtatatgaagcttttgctgaatatcaa
ctccctgaacttttaagaactccattgaattctctctgcttgcaaattaaaagtttacaa
gtcgaaagtattggggattttatctctgcttctcttcagccacctgaaccactggctgtt
caaaatgctgttgattttttgaagatgattggtgctttggatgaaaatgagaaccttact
catcttggaaagttcttgtctgtgcttcctgtggatcctaagctggggaaaatgctaatc
atgggtgctatctattgctgctttgaccctatactgacaattgttgctggtctcagtgtc
agggatccttttcttttgcctcaagataaaaaggatttagctggaacagctaagtcgaga
ttctcagcaaaggactatagtgatcatatggcacttgttcgtgcatatgaaggatggaag
gatgctgaaagagaaggatcagcatacgagtattgttggagaaacttcctctctctccaa
actcttcaagctatccattctcttcgtaaacaattcacttacatcttaaaagatgccggg
ttgctagatacagaagggtcaatcaataacagattaagtcacaatcaatcattggttcgc
gctgtaatatgttctggcctatttcctggcattgtgtctgtagtgcctcgtgagactaca
atgtctttcaaaacaatggatgatgggcccgtcttgctctatgcgaattctgtgaatgca
cgataccaaacgatacaatacccctggttggtatttggtgagaaggtgaaagtcaatact
gttttcatacgcgattcaactggagtatctgattctgttttgatcctgtttggtggtaaa
ctggagtgtggtgctacgggaggacatctgaaaatgttggaaggatatgttgaatttttc
atggacccaagcttggccgagtgctatctgaaactcaaggaggaggcagataaactatta
atacagaagcttggacatcccagcatggacattcacaaggaaggcaagtacctaatgctc
gctgttcaggagttggtgtcaggcgaccagtgtgaagggatgtttgtctttggtcgtgat
agcaagaaacccagagaatcctgcgataaagacaggtttacgaaagacggaacaaatcca
aagagcttgcttcagacactattgatgagagctggccactcacctcccaagtacaaaacc
aagcatctcaagacaaatgaattccgggctctagttgagttcaagggcatgcagtttgtg
gggaaaccaaagaaaaataaggccctagcagagaaagatgctgctatagaagcattggca
tggttaacccaaacatctgagaacaatcatgtcgaagatgtcaactctccgcctgatgtc
accgacaacatgttgaaacttcttggcaggcggaggaggtcaaagcgcaatccacgttaa
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