Salvia splendens (scarlet sage): 121745499
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Entry
121745499 CDS
T07627
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121745499
09124 Replication and repair
03420 Nucleotide excision repair
121745499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121745499
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121745499
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121745499
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121745499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
121745499
NCBI-ProteinID:
XP_041995369
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Position
8:complement(8237910..8240611)
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AA seq
414 aa
AA seq
DB search
MSVKDAEMKYNREDEEDDDGDGRGREAWERDYADERSWESLQEDESGLLRPIDNKTLYHA
QYRRRLRTTTAARIQKGLIRYLYIVIDLSRAAGEMDYKPSRMVVVARQVEAFIREFFDQN
PLSQVGLVTLKDGVANSLTSLGGSPESHIKALMGKLTSSGDASLQNGLDLVQSLLNQVPS
YGHREVLILYSALSTCDPGEIIETIQKCKASKIRCSVIGLSAELYICKYLCQETGGSYSV
ALDEFHLKELIFEHAPPPPAIAEFAVANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTC
PRCKARVCELPTECQICGLTLVSSPHLARSYHHLFPITPFDDVTPSATNNPNKLPKICFG
CQLSLLNPGNMPAPCVSCPKCEQFFCLDCDIYIHESLHNCPGCESFRHSKLVVA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttaaagatgcagaaatgaagtataacagagaagatgaggaagatgatgatggg
gatggtaggggacgtgaggcatgggagagggactacgctgatgagagatcgtgggagtct
ttgcaagaggacgagtctggtcttctccgccctatcgacaacaaaactctctaccatgct
caatataggagacgccttcgcaccaccacagctgctcgcatccaaaagggattgattcgc
tacttgtacattgttattgacctttcacgggcagcaggagagatggattataaacctagt
cgaatggtggttgttgctcgacaagtggaagcttttatcagagaattctttgatcaaaat
cccttgagtcaagttgggttagtgacattaaaagatggggttgcaaattccctgactagc
cttggtgggagtcccgagtcgcatatcaaagctttgatgggtaagttgacgagctcaggt
gacgcatccctccagaatgggttggatctcgtacagagcctccttaaccaagttccttca
tacggtcaccgtgaagttcttatcttgtattctgcacttagtacatgtgatccaggagaa
attattgaaacaatacaaaaatgcaaggcatctaaaatcaggtgttctgtcatcggtctc
tctgctgagctctacatttgcaaatacctttgtcaagaaactggtggatcatactcagtt
gcactagatgagtttcacttgaaagagttgatctttgagcatgcgcctccacctccggct
atagcagaatttgctgttgcaaatttgattaagatgggttttcctcaaagagccgcagaa
ggcgtaatttcgatatgttcttgtcataaagaggctaaggttggcgggggttacacttgc
ccaagatgcaaagctcgtgtttgtgaattgcccacagagtgccaaatatgtggccttacc
cttgtctcttctcctcatttagccagatcgtatcaccacttatttcctataacacctttt
gatgacgttacaccttcagccacaaataacccaaacaagcttccaaaaatttgcttcggt
tgccagctaagtcttctaaatcctggaaacatgccagctccatgtgtttcctgtccgaaa
tgcgagcaattcttttgcctcgattgcgacatatacattcacgagagcctgcataattgc
ccaggctgcgagagcttccgacattctaaattagttgtggcctga
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