Salvia splendens (scarlet sage): 121745930
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Entry
121745930 CDS
T07627
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121745930
04121 Ubiquitin system [BR:
sspl04121
]
121745930
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121745930
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121745930
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121745930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
FANCL_C
zf-ANAPC11
zf-C3HC4
zf-RING_16
ParcG
RINGv
zf-RING-like
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
121745930
NCBI-ProteinID:
XP_041995812
LinkDB
All DBs
Position
1:26424369..26437460
Genome browser
AA seq
1862 aa
AA seq
DB search
MGKAKGDAARTKSRPSSSSMAASLLPSGATVVGFGGYVGSSRVDSSLASTPDAVPVTDID
GDLALHLKRLSRKDPTTKLKALTSLSQLMEEKSAKELVVIIPQWAFEYKKLLLDYNREVR
RATHDTMTNLVTVVGRDLAPHLKPLIGPWWFSQFDSIYEVSQAAKRSFQTAFPAQEKRID
ALMFYSTEIFTYIEENLKLTPQSLSDKATASDELEEMHQQVLSSSLLAVAALYDIFFARS
GSEYVTGESKYGVKARSVALTSAEKLFSNHNYFLDFLKSQSPVIRSAAYSVIRSCLKNIP
HAIGEGDMKVLAGTILGCFQEKNPACHSSMWETLFLFTKSFPNSWASVNVQKTIVNRLLN
FLKNGCFGSQQVSYPSLVLFLEIVPSEAINGEKFLIEFFRSLWEGRSLSYSSQADQLAFF
LAAEECFIWSLRNASRYVDGEDGIYHLQCKLVDGILLGLFWHDYISSASSKDQDVPFSSY
SLGHSNSTIQPIYKESREVVNSKYSRDREESLGKCIIKIISGIHSIKRDLLLIFSSKFQA
GCLDMFQKTEYSSQKMQKIVKFILLLDGVQKGETWPLLDLVGPTLAKSFPLIGTLDSLDA
VQIILVSVSVFGPRKITQELTCSELGEEQFLKSFNEIIVPWCLKIFSPSTAARLDLLLAL
VDDECFSEQWDAIVSYIVDREKVGFDPAAVNRNCISVLAILMEKVRERTRKTVRHSALCQ
DNWHHELLDLVAVHVAQAYPPFGNSDAQFLCAVLGGGSKDDNISFVSWNTSVLIFMEVRK
WLMTFVMDSTFSWVKDLGSFLFNGRSLSHRSMGSSDTVLEKTHFALDILRGSSFSLSTVE
AESELLQDILAAIFIIDWEFNWVNVSEHKFDEEHSGKTGTRLSFYEAVHDFRCKACGQLL
KVFAVNSRKVLATVLTQAIKCTMFMDSIYCSENFISSCCHWALDIFELFCQDQVEEQQLL
DQLLSKNELWPLWVVPDKTGVRLRTDNVPTQVPKNSKFVALVDKLISKLGFDRIIAGSVF
EASASSAECSVDNLAISQSHYYRPWLAAEILCTWKWLGGSIFSSFLPSLISNVKSRDHGL
SDSILRILLDGALVHGAGNGLNLLWHASADELEAVEEPFLRALASLLSTLFEEDVWGNDK
AASLFKLLLEKLYIGDAVNSNCLEVLPSVVNILIVPLVIGYGDSMNNQHDLYRLSEFHSA
TVDWMKKAISFPALNTWHTGEDMEDWLHLVISCFPVKITELIGGVKPGRYVSHVERTALY
ELFLKQRQGASAVINKLPLVQKLMSELVVISVAYCWEDFDEDDWKFVMHQLRFWIEAAVV
MIEEIVENINQTLTDGPNDSNASLDKIKINVVSIDSFAIELARNALVGFSLLCSLIKPWD
KLQDGNVNPLGDDKWEFITDRIFEGVLRLFFCTAVAEAIVNARCPEASSIIALSRLDHRR
FWELVASCSVQSSPHARDKAVKSLEVWGMSEGAISSLYALVFSCKPFPPLQYAAFILLST
EPVVQSAITYCRDDGTTNNEDSLDTPSENAHLREEISHKLEKLPHEVHEMDLVAHERVNV
LVAWSLLLSHIVSLPSSSPERERMIQYVQNSTNPAILDCLFQHIPLDPYMGTTSKRKDIE
LPAEVSEAANAARRAVTSSSILFSLELLWPIEPAKMASLAGAIFGLMLHNLPAYVRGWFS
DIRDRSALSAIESFTKAWCSPTLISNELSQIKKASFADENFSIVVSKSANEVVATYTKDE
TGMDLVIHLPPSYPLRPVDVDCTRSLGISEVKRRKWLMSLMAFIRNQNGALAEAIRIWKN
NFDKEFEGVEECPICYSVIHTVSHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQS
PF
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagccaagggagatgctgcaagaaccaaatctcgcccctccagcagcagcatg
gctgcttcgctgttgccgtcgggcgccaccgtggtagggttcggaggctacgttgggagt
tcacgtgtggactcatcactcgcatcgacgccagatgctgttccggtaacggatattgat
ggtgacctggcgctgcatttgaagcggctgtcgcggaaagatcccaccaccaagcttaaa
gctttgacatcgctttctcaacttatggaagagaaatctgcaaaggaattagtagtgatc
attcctcagtgggcatttgagtacaagaagctgttgctcgactacaacagagaagttcga
cgagcaacacatgataccatgactaatcttgttactgttgtgggaagagacttggctcca
cacctaaagcctttgataggaccatggtggttttcgcagtttgattcaatatatgaagtt
tcccaagctgcaaagcggtcatttcagactgcctttccggctcaggagaaaagaattgat
gccttgatgttctattcaactgaaatatttacatacatagaagaaaatctgaagctcact
cctcagagtttgtctgataaagccactgcatcagatgaacttgaagaaatgcatcaacag
gtgctttcttcatcattactggcagtagcagctctttacgatattttcttcgctcggtct
ggttcagaatatgtaactggcgaatcgaagtatggagtgaaagcccggagtgtagctctt
acttctgcagaaaagttgttctcaaatcataattattttctagattttctaaagtctcaa
agcccagttattaggtcagctgcatattcagttattagaagttgtttgaaaaacattcct
catgcaattggtgaaggagatatgaaagtacttgcgggaaccatacttggttgtttccag
gaaaagaacccagcttgccattcatcaatgtgggaaactttgtttcttttcacaaaaagc
tttccaaacagttgggcctctgtgaatgttcaaaaaaccatagtaaaccgattattaaat
tttcttaagaatggctgttttggatctcagcaagtatcatatccatctctggttctgttt
ttggaaatagtaccttccgaagcaatcaatggggagaaatttcttattgagttttttaga
agcctctgggaagggagaagcctgtcttattcatcacaagcagatcagcttgcatttttt
cttgcagcagaagaatgctttatttggagcttgcgaaatgcttccagatatgttgatggg
gaagatggcatttaccatctacagtgtaagcttgtagacgggattctactgggcctattc
tggcatgactatatatcatcagccagctcaaaagaccaggatgtacccttttcatcatat
tctctgggccattcaaatagtaccatccagcctatttataaggagtcaagagaagtagtg
aacagtaagtattcgagggatcgtgaggaaagtcttgggaaatgcatcattaagatcatt
tctgggattcacagcataaaacgcgatctgctcttgattttttcttcaaaatttcaagcg
ggttgtctggatatgtttcagaaaacagagtattcttctcaaaaaatgcagaagatagtc
aaatttattttactacttgatggggtgcagaaaggagagacatggcctttgctggactta
gtcggacccactttggcaaagtctttcccattaattgggacactcgactcactggacgca
gttcagataattttggtttctgtatctgtatttggacctcgcaagataactcaagagctt
acatgtagtgaattgggagaagaacagtttctgaaatcattcaatgagataattgttcct
tggtgcttaaaaatatttagtccatctactgctgctagattggatctcttgcttgcctta
gttgatgatgagtgcttctcagagcagtgggatgcaattgtttcatatatagtggacaga
gaaaaggttggttttgatcctgcggctgtgaatagaaactgcatatctgtcttggctatt
ctaatggagaaggtaagggagagaactaggaagactgttcgacactctgcattgtgtcaa
gacaactggcatcatgaacttctggatttggttgctgttcatgttgcacaagcctatccc
ccgttcggaaattctgatgctcaatttttgtgcgctgtcctcggtggaggatcaaaggat
gataatatttcctttgtctcatggaacacatcagttctgatattcatggaagtcagaaag
tggctaatgacttttgtgatggattctacattttcttgggttaaagatctaggttccttt
ttgtttaacgggagaagtctttcacaccggagtatgggatcttctgatactgttttggag
aaaactcattttgccctggatattctccgtggtagttctttttctctcagtacagttgag
gctgaaagcgagcttcttcaagacatattggctgctattttcataatagactgggaattt
aactgggtcaatgtttctgagcacaagtttgatgaagagcattcaggaaagactgggacc
aggttgtcattttatgaggctgtccatgacttccggtgcaaagcatgcggacagttattg
aaagtgtttgctgtaaatagccggaaggttttggcaactgttttgacacaggcaataaaa
tgcactatgtttatggatagtatatattgttcagagaattttatttcttcctgctgccat
tgggcacttgatatttttgaacttttctgtcaagaccaagttgaggaacaacagttgttg
gaccagttattgagtaagaatgagttgtggccattatgggtcgtaccagataagactgga
gtcagattgagaactgacaatgttcctactcaagtacccaaaaattccaaatttgttgct
ctggttgacaaactaatatctaaacttggatttgatagaataatagctggttctgtattt
gaagcatcagcttcttctgctgagtgttctgtggataacttggcaatcagtcaatcacat
tattatcggccttggcttgccgctgaaattttgtgcacatggaaatggctaggcggcagt
attttcagttcctttttaccttctttaatcagcaacgtgaagagtagagatcatggttta
tcagattcaattttgagaattctgcttgatggtgcccttgtccatggagctggaaatggg
ttaaatcttttatggcatgcttcagctgatgagttagaggctgttgaggaaccctttttg
agagcgctagcatctttgctctctacattgtttgaagaagatgtgtggggaaatgacaag
gctgcatcactcttcaaattattactggagaaactctacattggtgatgctgtgaattca
aattgcttggaggttttaccatctgttgttaacatacttattgtccctttggtcattgga
tatggagattctatgaacaatcagcatgatctgtatagactaagtgaattccatagtgca
acagttgactggatgaagaaagccatatcgttccccgcactgaatacatggcatactgga
gaagatatggaggactggcttcatttggttatttcttgtttccctgtaaaaataacagag
ttgataggtggggtaaaaccagggaggtatgtctcccacgtggagagaaccgctttgtat
gagctgtttctgaagcagaggcagggggcctcggctgttataaataagctacctttagtg
cagaagctgatgtcggagttggttgttatctcagttgcttattgctgggaagattttgac
gaagatgactggaaatttgttatgcatcagctaagattttggatcgaagcagcagtagtc
atgatagaagaaattgttgaaaatatcaatcaaactttaacagatggacctaatgattcc
aatgcttcattagataagattaaaataaatgtagtgagtattgattcttttgccatagaa
cttgcaagaaatgcacttgttgggttttctttgctttgttccctcatcaaaccatgggac
aagttacaggatggaaatgtaaatcctttgggggatgataaatgggaattcatcactgat
cgtatattcgaaggtgttctgcgtttgtttttctgcactgctgtggcagaggcaatagtg
aatgcacgttgtcccgaggcttcctctattattgcattgtctagacttgatcatcgtagg
ttctgggagttggttgcttcgtgttctgttcagtctagtccacacgcaagagacaaagct
gttaaatcattagaggtttgggggatgagtgaaggagctataagctctttgtatgcttta
gtgttttcatgcaaacctttcccacctctgcaatatgcggcttttattcttctatcgact
gagcctgtggttcaatcggctattacatactgtagggatgatggtacaaccaataatgag
gattctcttgatacaccatcagaaaatgctcatttaagggaagaaatttctcacaaacta
gaaaaattacctcatgaagttcatgaaatggatttggttgcacatgaacgggtaaatgta
ttagttgcttggtctttactgctatcacatatagtatccttgccatcatcatcacctgaa
agggagagaatgatccaatatgtgcaaaattctacgaacccagcaatactggactgtctt
ttccagcacattcccttggacccatacatgggcaccacttcaaagagaaaagatatagag
cttcctgcagaagtctctgaagcagctaatgctgcaagacgtgctgtcacatcaagttcg
attttgttttctctagagttgctttggcccattgaacctgcaaaaatggcttcactcgcc
ggtgcaatatttggtttgatgcttcataatcttccagcatacgtccgagggtggtttagt
gatatacgtgaccgctcagcattatctgccattgaatctttcacaaaagcatggtgtagc
ccaacattgatctcaaatgaattatctcagattaagaaagctagttttgcggatgagaat
ttctccattgtcgtgagcaagtcagctaatgaggttgtggccacttatacaaaggatgag
acagggatggatctagtgattcaccttcctccatcatatcccctgagacccgttgatgta
gattgtaccaggagccttggcataagtgaggtcaagcgaagaaaatggttaatgtctttg
atggcatttatccgcaaccagaatggggccttagctgaggcaataaggatatggaaaaac
aatttcgacaaggaattcgaaggagtcgaggagtgccccatttgttacagtgtcatccat
accgtcagccatagtttgccacgccttgcatgcaagacctgcaagcataaattccattcg
gcttgtctttacaaatggttctcgacttctcacaaatcaacatgtccattgtgccagtct
cctttctga
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