Salvia splendens (scarlet sage): 121746533
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Entry
121746533 CDS
T07627
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121746533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121746533
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121746533
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
121746533
NCBI-ProteinID:
XP_041996348
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All DBs
Position
9:4316017..4322175
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AA seq
941 aa
AA seq
DB search
MGDNFEEHNKLPELKLDAKQAQGFISFFKKLDADPRAIRFFDRKDYYTTHGENATFIAKT
YYHTTTAVRQLGSGSDAISSVSVSKNMFETVARDLLLERTDHTLELYEGNGANWRLVKSG
SPGNLGSFEEILFANNEMQDSPAIVAVLSNLRESGCTVGLGYVDLTKRVLGLAEFPDDSH
YTNLESTLVALGCKECLLPGDIAKSSDFKSLTDALSRCGVMVMERKRVEFKGRDLVQDLG
RLVKGSIDPVRDLLAAFEFAPSALGCVMSYADLLADETNYGNYKIQRYDLDSYMRLDSAV
MRALNVMESKSDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVDEINSRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTRSLEKKKASLVHVVKLYQSSIRLPFIKNALEQYNGQ
FALLIKERYLDPLDTWTDDKHLNRFIALVETSVDLDQLENGEYMISSGYDSQLLTLKNEQ
ESLEQAIHDLHRKAANDLDLPIDKALKLEKGTQYGYAFRITKKEEPKVRKKLNVHFIVLE
TRKDGVKFTNTKLKKLSDQYQKVVEEYKSCQRELVARVVQTAASFSEVFEGLAWTLSEMD
VLLSFADLAAGSPTAYTRPTISPPDEGDIILEGSRHPCVEAQDWVNFIPNDCKLLRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQIGSFVPCDNASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIQAPTLFATH
FHELTALAPESASNEQSSKKLPGVSNYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALARAKASELEDFSPAAILPSDPKEVGTKRKRAEDSDDVTKGAERARQFL
KDFSELPLDKMELEQALEQVRKLKEGLEKDAVNSCWLQKFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaattttgaggagcacaacaagcttcccgaactcaaactcgatgccaaacaa
gctcaagggtttatctcattcttcaaaaagctagacgctgacccacgagccattcgattc
ttcgatcgcaaggattactatactacacatggagagaatgcaaccttcattgccaagacc
tattaccacacaacaactgctgtgcgccaactaggaagtggctcggatgccatttctagt
gtcagtgtaagcaagaatatgtttgagactgtggcccgcgaccttcttttggagaggact
gatcacactcttgaactgtatgagggcaatggagcgaattggagacttgtgaaaagtgga
agccctggaaatttaggcagttttgaagagattctgtttgccaataatgaaatgcaggac
tctccagcaattgtagctgtcctatcaaatttacgtgaaagtggatgtactgtagggtta
ggctatgtcgatcttactaagagagtacttggattggctgagttccctgatgatagccac
tatacaaatttggagtcaactcttgttgctcttggctgtaaggaatgccttctgcctgga
gatattgcaaaatctagcgattttaaatcattaactgatgcattgtccaggtgtggtgta
atggtgatggaaagaaaaagggttgagtttaaagggagagatttggtacaagatcttggt
aggcttgtgaaaggctcgatagatccagtaagagatctgcttgctgcatttgaatttgca
cccagtgctcttgggtgtgtaatgtcttacgcagatctacttgcagatgagaccaattat
ggtaactacaagatccaaaggtatgatcttgatagttatatgagattagattctgctgta
atgagggcactaaatgtcatggagagcaaatctgatgctaataaaaactttagcttattt
ggtctcttgaatagaacctgtaccgcaggaatgggcaagcgcctattgcacatgtggctg
aaacaacccctgttagatgtagatgagataaactctaggctggatttggtacaagctttt
gtggaggatgctgccctacgccaagatctaaggcagcatttgaaaagaatttcagatatt
gagcgactgacgcgctctcttgagaagaaaaaagctagtctagttcacgttgttaagctt
tatcagtctagcatcaggcttccattcataaaaaatgcattggaacagtacaatggacaa
tttgctttgttgattaaggagaggtacttggatcctctagacacatggactgatgataag
catttgaacagattcattgctcttgtcgaaacttctgtcgaccttgatcaacttgagaat
ggagaatacatgatttcatcagggtatgattcacagttattgactttgaaaaacgagcaa
gagtctctggaacaagcgatacatgatttacacagaaaagctgctaatgatcttgatctg
cccattgataaagctctgaaactagagaaagggacacaatatggatatgcttttaggatt
accaaaaaggaggagccaaaagtgaggaaaaagctcaatgtgcactttattgttcttgaa
actcgcaaggatggggtgaagttcacaaacactaagctaaagaaactaagtgaccaatac
cagaaggtggttgaggaatataaaagttgccagagagaattggttgcccgagtagtccaa
actgctgcaagtttttcagaggtgtttgaaggattagcttggacgctttctgagatggat
gttttacttagttttgcagatttggctgctgggtcccccaccgcttacacacgacctacc
atctctccaccagatgagggagatattattttagaagggagtcggcatccttgtgttgaa
gctcaagactgggtgaactttatccctaatgattgcaagcttcttagggggaaaagctgg
ttccagattatcacaggacctaatatgggtggaaaatcaacattcatacgacaggttggt
gtgaatattctaatggcacagatcggttctttcgttccatgtgacaatgctagcatttct
atacgtgactgcattttcgctcgtgtgggcgctggtgactgccagctacgtggggtttca
acattcatgcaagaaatgctagagacagcatctatcttgaaaggagcaacaaacaggtcg
ttaatcatcattgatgagctaggtcgtggcacgtcaacatatgatggatttggcctagct
tgggcaatttgtgagcatatagttgaagtgatacaagcacccacactatttgcaactcac
tttcatgagctgactgccttagctcctgaaagtgctagcaacgagcaatcttccaagaaa
cttccaggagtatctaattatcatgtgagcgcacacattgattcgtcaagtcgcaagctt
acgatgctttacaaggttgaaccaggagcctgtgatcaaagttttggcatacatgttgcg
gaatttgctaacttcccagaaagcgttgttgcccttgcccgagctaaggcttctgaatta
gaagatttctcaccagcagcaattttaccatctgatcccaaagaggttggaaccaaacgg
aagcgagcagaggactctgatgatgtaactaagggcgccgaacgggctcgccagttcttg
aaggacttctctgagctaccattagataagatggagttggaacaagcgctagaacaagtc
agaaaattgaaagaagggttagagaaggatgcagttaacagctgctggctccagaaattc
ttctag
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