Salvia splendens (scarlet sage): 121746888
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Entry
121746888 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121746888
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121746888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121746888
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121746888
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121746888
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121746888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
121746888
NCBI-ProteinID:
XP_041996778
LinkDB
All DBs
Position
9:complement(2207832..2215637)
Genome browser
AA seq
991 aa
AA seq
DB search
MEMESTRRSFDRSLSKEPGPKKPRLTEDPSAADRIANGRAGFVQRPAVSNPAVGGGPRAQ
RDRDSESSDSVRGPFQHQPAAQLHHELVSQYKTALAELTFNSKPIITNLTIIAGESLPAA
KAIAAAICNNIIEVPSEQKLPSLYLLDSIVKNIGRDYIKHFASRLPEVFCKAYRQLDPSI
HQGMRHLFGTWKGVFPPQSLQLIERELGFTSAATVSAAPRTESQAQRPAHSIHVNPKYLE
ARQRLQTSRSIEKHQRDQVSDTVSEKSSGVPFADSDYGSGVLGHSGLGSGRMTEHLKEPG
YDRTWDESSSDMIGMPHQKNGFGLKHGSESYVTHEPANFDLDLQHKKNISSRNTNGMRDN
WKDSEEEEYTWSEMNSRPTVADAPTKNQWAPANYDRLDFESRLSGHQNIHDIGSRNDDEV
SVDSISIDRSQVASGAQVSLWSQKLHPPEESMHLGTGKTLSVQSEGYPTRLKSSQSTLGK
THSLSQLSQTHIGTPSFKFPVNEAPLSKASMSQERQTLAPSSSARSMVHQRPPSSSVSSH
SQNHFLNNFADCDPTATGPPTDPRRRPGQKNTNYRDQVPEDPPMPTREVYQASTQKPHPA
SLRSTPALVPPTQQKKHTPASLRRSIEVSQSESSAPEHRMLPSHISGSETMGNSSSDQSN
PFTVDSPGKSITSSITGSLNDPSWSGSSRNILHGTVVPPALSQSIGSEKMPAVNSTSNPF
SSLLSSLVAKGLISSSKSDPVLSISPNPDQPMDDVPETASTSSAPVSSVPVTLSKPIVSA
RDEPYSSESTLKASDRLPPPAEKIKHLIGFEFKPDVVRKFHPVVISDLLCDLPHLCTICG
CKLKFQEQLDRHMEWHASRVPEDDPMSKMSRSWYTNVVDWVAEVGSAHLDSSPLDIGGSG
DILESNEPLVPADESQCACILCGELFEDFYNQEKGEWMFKGALYLTIPSSNEGLGATSDG
LILSPIVHSACISEDTMNDLGLDYDIKMVSN
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagcacacgcagatcgtttgatagatctctttcgaaagaaccgggaccg
aagaagcctaggctcacagaggatccttccgcagcggatcgaatcgccaatggccgtgcc
ggatttgtgcaacgtccagctgtttcgaaccctgccgtcggaggaggcccgagggcccag
agggaccgcgattcggagagtagcgattctgttcggggcccctttcaacatcagccagcg
gcgcagttgcatcatgaactggtgtctcagtacaagactgcgttggctgagctgactttc
aattccaagcccataataaccaacctgacaattattgccggagagagtttgcctgcggcc
aaggccattgcagctgctatctgcaacaatattattgaggttcctagcgagcaaaaactg
ccatctctgtatctactagacagtattgtgaaaaacattgggagagattacataaaacac
ttcgcttccagattaccagaggtcttctgtaaggcatatagacagctcgatccttcaata
caccaaggtatgcggcacctctttggcacctggaagggagtcttccctccacagtcactt
cagctgattgagagggagcttggattcacctctgcagctactgtttcagcagctcctaga
actgaatcacaagctcaacgtcctgcacatagcattcatgtaaaccctaagtatttggag
gcaaggcagcgactgcaaaccagcaggtctatcgagaaacatcaaagagatcaagtaagt
gatacagttagtgagaaaagttctggtgtaccatttgcggattctgattatggttctggt
gttttggggcattcgggcttgggaagtggaaggatgacagaacaccttaaagagcctgga
tatgacaggacctgggatgagtcaagcagtgatatgattgggatgccacatcaaaagaat
ggttttggtctgaagcatggatcagaaagctatgttacccatgagccagcaaattttgac
ttagatctacagcacaagaaaaatatatccagtaggaacacaaatgggatgagggataac
tggaaagactctgaggaggaggagtatacctggagcgagatgaactctagacccactgta
gctgatgctccaactaaaaatcaatgggcaccagccaattatgatagattggattttgaa
agccgtctctcagggcatcaaaatatacatgatattggatcaaggaatgatgatgaagtc
tcagttgattccatttccattgatcgcagtcaagtggcatctggggctcaagtgtcattg
tggtcacaaaagctgcacccaccagaagaaagcatgcatttaggaactggtaaaaccttg
tcagttcagtcggagggatatccaactcggttgaagagctcccaaagtacattgggcaag
acccattccctgtcacagctcagtcaaactcatattggaaccccaagctttaagttccca
gtgaacgaagcacctttatctaaagcttctatgagtcaagagcgacagactcttgcccct
tcatcttcagcccgatcaatggtgcatcaacgtcctccctcatcgtctgtttcttcacac
agtcagaatcattttttaaacaatttcgctgactgtgaccccactgctaccggccctcct
acagatcctagaaggcgtccagggcaaaagaacacgaactatcgtgaccaagttccagag
gatcctcctatgccaacccgagaagtttatcaggccagcacacagaagccgcatcctgca
agtttacggtctacacctgctttggtgcctcccactcaacagaagaaacacactcccgct
tctctacgaagaagtattgaagtctcccaatcagagtcttctgcgccagaacaccgcatg
ctaccgtcacatatttcaggctctgaaacgatggggaattcgtcttctgaccaatcaaat
ccttttactgttgattcccctggaaaatccattactagttcaataacaggtagcttaaat
gaccctagttggtctggttcatctcgaaatattttacacggaactgtagtaccccctgca
ctttctcagagtattggttcagagaagatgccagcagttaactccacctctaatcccttt
tccagtctcttaagctcattggttgcgaaaggcctgatatcttcttcgaaatctgatcct
gtgctgtccatctcacctaatcctgatcaacctatggatgatgtccctgagactgcaagt
actagttcagctccagtatcttctgttccagtcaccttgtcaaaacctatcgtgtctgct
agagatgagccatattcatcagagtctactctcaaggcttctgacagattgcccccccca
gcagaaaagataaaacatcttattggttttgagttcaaaccagatgtagtccgtaagttc
catccagttgtgattagtgaccttctctgtgaccttccacatctttgcaccatatgtggt
tgtaaacttaaatttcaagaacagcttgacagacacatggaatggcatgcatcaagggtt
cctgaggatgatcccatgagcaagatgtcaaggagttggtacacaaatgtagttgattgg
gttgcagaagttggtagtgctcatcttgatagtagtcctttggacataggaggttcaggt
gatatactggaaagtaatgagccgttggtccccgcagatgagagtcaatgtgcatgtata
ttgtgtggtgagctgtttgaagacttctacaaccaagaaaaaggcgaatggatgtttaaa
ggagcactttacttgaccatcccatcctcgaatgaaggacttggagcaacaagtgatggt
ttgattcttagtccgatagtccattctgcctgtatatcagaagacactatgaatgacttg
gggctagattatgacatcaaaatggtgagtaattaa
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