Salvia splendens (scarlet sage): 121747348
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Entry
121747348 CDS
T07627
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121747348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121747348
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121747348
mRNA degradation factors
5'-3' decay
Decapping complex
121747348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
DUF445
Motif
Other DBs
NCBI-GeneID:
121747348
NCBI-ProteinID:
XP_041997323
LinkDB
All DBs
Position
9:complement(29808928..29818747)
Genome browser
AA seq
1393 aa
AA seq
DB search
MASPIDMHKLFKPSTPPPQQQHPNSNPNPPQSFPNNVANTNSNPNLASAPFPVPSASYPP
PTGAGSVPYSYSPQTSPYHYHPVYTPYSNPPPHQDFANVHPQRSMSYPTPPLQPQPQSPN
NNFQNPQNPSNPGARLMALLSAPPSTSEVPQPMAQIHPTSSSASDFSMPPGPVMRMPSSK
LPKGKHLIGNHLVYDVDVRLPGEVQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLK
LGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGSDEEDK
PQITGKIVIALQITGEGDSLHPRVCWHCHKQEVLVVGIGRRVLKIDTTKVGKGEKYSAEE
PLKCPIEKLIDGVQLVGSHDGEITDLSMCQWMTSRLVSASVDGTIKIWEDRKSSPTAVLR
PHEGQPVNSVAFVAAPHRPDHIILITGGPLNRELKIWVSAREEGWLLPSDAESWHCTQTL
ELRNSEEGRLEEGFFNQVAALSQAGLLILANAKRNAIYAVHMEYGPNPAASRFDYIAEFT
VTMPILSFTGTSEVRPHAEQIVQVYCVQTQAIQQYALDLSQCLPPPTENVVYEKTDTSVS
RDAGSIEGIASVEPSGSKPTEISRSSTAPKASVHESSFDNALAVRYAVGAVSGESPATQE
FATSSMESKQVNLSRAANDTDISLATSTPLPPSPRVSRTLSGFSRSSSIEQGSPGSEQKV
IEYSVDRPIDGVHGNLPDVASLDDDSQDDISTAPNHPIKFKHPTHLVTPAEILMATSSSD
VNHTIEPQSEGEHNIQDVVVSNDTRNVEVEVKVVGETNFSPSNDIGPREELETFVPENRE
KIFCSQASALGMGIARECRALSPETYTVEEARQVSGTAGTEADTRSSTIVEEEGHYSAKD
VIQRDDDSSTPLPAQPTAPTTKGKKQKGKNVQGSGQSSQSPSESSSIDYPVEPGVSSSTP
QQETGVSQMLPVQEMLNQIVSMQNEMHKQLAMMVAVPVTREGKRLEAALGRSMEKAVKAN
SDALWARLQEENAKQERAAKERMQQLANTISNCLNKDLPTIVEKTVKRELTTVGPSVART
ITPAIEKIISTSITESFQKGVGDKAVNLLEKSVSSKLEAVVARQIQVQFQTSGKQALQDT
LKSTLEVSVIPAFEMSCRTMFEQVDTAFQKGMVEHTSAAQQQFEASHSPLALALRDAINS
ASSMTQTLSNELLDGQRKLLAIAISGANSKAPNLLSQLSNGPLGSLHEKLEVPPDPTKEL
SRLMAERKYEEAFTAALQMSDVKTVSWLCSQVDLPGILSVNPLPLSQGVLLSLLQQLACD
ISKDTPRKLTWMREVMTAINPTDPMIAVHVCPIFEQVYQILNHQRNLPTMGGAELAIIRL
IMHVINSMLMSSK
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccaatcgatatgcataaattgttcaagccctctacaccgccgccacagcag
cagcatcccaattccaaccctaatccgcctcagagcttccccaataacgttgccaatact
aattctaaccctaatttggcttccgcccctttcccggtcccgtcggcctcgtatccgccg
cccaccggcgccggaagtgtgccctactcctattccccccagacgtctccgtaccattac
cacccggtctacaccccctactccaacccccctcctcatcaggactttgctaatgtgcac
cctcagaggtccatgtcttatcccaccccgccgctccaaccccaaccgcagtcccctaat
aataatttccaaaacccccaaaaccctagcaatccaggtgctcgtttgatggcgttgctg
agcgcgccgccatctacctcagaggttccgcagccaatggctcaaatccaccccacttcc
tcctcggcctccgatttttctatgccaccgggcccggtaatgcggatgccgagtagtaag
ctgcccaaggggaagcatttgatcggaaatcatttggtttacgacgtagatgtaagattg
cctggagaagtacagcctcagcttgaggtcacacccatcactaaatatgggtcggatcct
ggacttgttttggggaggcaaattgcggttaataagacttacatctgttatggtctgaag
ttgggggctatccgggtgctcaatattaacactgctttgagatccttgcttaagggtcta
gcgcagagagtcacggacatggctttttttgcagaggatgttcaccttttggctagtgca
agtgtggatggacgggtttatgtgtggaaaataacagaaggctcagatgaagaagataag
cctcaaattactggaaagatagttattgccttacagattactggagagggggattctctc
catcctagagtttgttggcactgtcataaacaagaagttcttgtagtgggaatcggaaga
cgtgttctgaagattgatactacaaaagtgggaaaaggtgaaaagtattcagcagaggaa
cctcttaaatgtccaattgaaaagttgattgatggcgtccaacttgttggcagccatgat
ggagaaataactgacttgtctatgtgccagtggatgacgtctcgcttggtatcggcttca
gtggatggaacgataaagatttgggaggatcgcaagtcatctccaactgcagttctcagg
ccacatgaaggacaacctgtcaattccgtggcctttgtggctgctcctcatcgcccagat
catatcatacttataactgggggccccctgaatcgggaattgaagatttgggtttcagca
agagaagaagggtggttgcttcctagtgacgcagaatcatggcattgtacccagacgttg
gaattaagaaactcagaggagggtagactagaagaaggtttcttcaatcaagtagcagcc
ttgtcacaagctggccttcttatattggcaaatgccaagagaaatgctatttatgctgtg
cacatggaatatggccctaatccagcagcaagccgttttgattatatagcagaattcact
gtcactatgccaatacttagttttacagggacaagcgaagtacgacctcatgctgaacaa
attgttcaagtatattgtgttcagacacaggctattcagcagtatgctttggacttgtca
cagtgtctgccaccccctacagagaatgtagtctatgagaagacagacactagcgtttca
cgggatgctggaagcattgaagggattgctagtgtggagccttctggcagtaaaccaacc
gagatttctagatctagcacagctcccaaggcaagcgtgcatgaaagtagctttgataat
gcattggccgtaaggtacgctgttggtgctgtttctggtgagtcaccagccacacaagag
tttgctacctcaagtatggagtccaaacaagttaatttgtccagagctgctaatgatact
gatatttctcttgccacttcaactccactccctccgagtcccagggtttctagaactcta
tctggttttagtcgatcaagcagcattgagcaaggttcacctggttcggagcagaaagtg
attgagtattcagtggatagaccgatagatggtgttcatggaaacttgcctgatgttgct
tcattggatgatgattcacaagatgatatttctactgctccgaaccatccaatcaagttc
aaacacccaactcatttggtaactcctgctgagatattgatggccacttcatcctctgat
gttaaccacacaattgagcctcaaagtgagggcgagcataatattcaagatgtggtagtt
agcaacgatacaaggaatgttgaggtagaggtcaaagttgttggcgaaacaaactttagt
ccaagtaatgacattgggccccgagaagaacttgagacttttgtgccagagaatagggag
aaaatcttttgctctcaagcttctgctcttggaatggggatagctcgggaatgccgcgcc
ttatcgccggaaacttacactgtggaggaagctaggcaggttagtgggacagctggaaca
gaagcagatacccgatcctctaccatagttgaagaagaaggtcattactctgcaaaggat
gtgattcaaagggatgacgattcttcaactcctctgccagctcaaccaactgcaccaact
acgaaagggaagaagcagaagggaaagaatgtgcaaggatcaggccaatcttcacaatca
cctagcgagtccagttcaattgattatcctgttgaaccaggtgttagctctagtactcct
cagcaggaaactggagtttcacaaatgcttcccgtgcaagagatgctgaatcagattgta
agcatgcaaaatgaaatgcacaagcaattggcaatgatggttgctgttccagttaccagg
gagggaaaaagacttgaggcagccttgggaaggagcatggagaaagctgttaaagccaat
tctgatgctttgtgggctcgtcttcaagaagaaaatgcaaaacaggaaagagcagcaaag
gagcgtatgcaacagctagcgaatacaatcagcaattgcttaaacaaagacttacccact
attgtagagaaaactgtcaagagagaactgaccacggttgggccatctgtggcacggacc
attactccggccattgagaaaataatttccacttctattacagagagcttccagaaagga
gttggtgataaagctgtaaatttgttggagaaatcagtcagctcgaaacttgaagctgta
gttgctaggcaaatccaagttcagtttcaaacttctggcaagcaagctcttcaggacacc
ctgaaatcaaccctggaagtttctgttatccctgcatttgagatgtcatgtaggaccatg
tttgagcaggtcgatacagcatttcaaaaaggaatggttgaacatacgtcagcggctcaa
caacaatttgaggcgtcacattctccgttagcccttgcactaagggatgctataaattca
gcatcatcaatgactcaaactttgagcaacgagttgcttgatggccaaagaaaattgtta
gctattgccatatctggagccaattctaaagctccaaatctgttaagccaactaagtaat
ggtcctttaggttcgctccatgagaagcttgaggttcctcctgacccaaccaaagagcta
tctagactgatggctgagcgcaagtatgaggaagctttcactgctgccctacagatgagc
gatgttaaaaccgtatcatggttgtgttctcaggttgacttacccggaattttgtcggtg
aatccccttcctttgagccaaggtgtacttctctcccttttgcagcaattggcttgtgat
atcagcaaagatacaccacggaagttaacgtggatgagggaggttatgactgcaataaat
ccaactgacccgatgattgcagtgcacgtatgcccaatctttgagcaggtgtatcagatc
ttgaatcaccagcgcaaccttccaacgatgggtggtgctgaacttgccatcattcgcttg
atcatgcatgtcattaattccatgctcatgagctccaaatga
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