Salvia splendens (scarlet sage): 121747470
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Entry
121747470 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121747470
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121747470
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
121747470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
AAA_19
Pyr_redox
Spectrin_1st_PEPL
DUF6385
Motif
Other DBs
NCBI-GeneID:
121747470
NCBI-ProteinID:
XP_041997438
LinkDB
All DBs
Position
9:complement(8972863..8997827)
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AA seq
2085 aa
AA seq
DB search
MLMELPRLTNSLRSPFDADQAYLNRKSFLQNLNRTSYTAASGESELARKIIYRWDEASFE
VRQLYKQFVVAVVELMGGEVVSEEFQEVAIKAYRLFSGTSESEVDERDRIILSKKFELQK
LVGHTVLDANILKVASLVERLSSLQNKVHGFDYLPELTSEGSEDVEFGADLAFQPPARFL
VDISIENGEDFLEETGTSSSNHDGWSNNLGSANSHTAVSAGSYDLEWLRDACDRIVSAST
SQLPRDELAMTICRILDSEKPGDEIAGDLLDFVGDSSFEIVQDLIMHRKDLVESIHHGLL
VLKSDRSTSNTQIKYPSYATQVTVQTESEKQIDKLRRKEEKKNRRGTDHGTEHDLSSFSF
SSLLQASEKKNILDDLVGHGDGAQFVATALPQGTVRKHYKGYEEVIVPPTPTAPLKPGEK
LIDIKELDDIAQAAFQGYKSLNQIQSRIFQTTYYSNTNILVCAPTGAGKTNIAMISILHE
IGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLAPLNITVRELTGDMQLSKNELE
ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLQQHYIGISENNFAARN
ELMNEICFNKVVDSLRRGHQVMVFVHSRKDTGKTAEKLIDMAKLHEDFDLFTNASHPQQG
LIKKDVLKSRNRQLVQFFDYAVGIHHAGMLRADRGLTERLFSEGLLKVLVCTATLAWGVN
LPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYL
RLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGW
DEVVADPSLSLKQRALVSDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIHYSSVET
YNELLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELETLARSCPLEIKGGPSNKHGKVS
ILIQLYISRGAIDSFSLVSDASYISSSLARIMRALFEICLRRGWSEMSSFMLEYCKAVDR
QIWPHQHPLRQFDRDISTEILRKLEERGVDLDRLYEMEEKDIGTLIRYAPGGKLVKQYLG
YFPMVQLVATVSPITRTVLKVDLTITPEFIWKDRFHGTALRWWILVEDSENDHIYHSELF
TLTKKMAKGEPQKLSFTVPIFEPHPPQYFIRAISDSWLHSESFYTISFQNLMLPEAHTTH
TELLDLKPLPVTALVNGTYEALYRFTHFNPIQTQAFHVLYHTDQNVLLGAPTGSGKTISA
ELAMLHLFNTQPDMKVIYIAPLKALVRERMNDWRKRLVSQLGKHMVELTGEYTPDLTALL
SADIIISTPEKWDGISRNWHSRSYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TERPVRFVGLSTALANAHDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRQFLAIPEELLQMI
VSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEFFEAKSKRYVDFPITDILQMMGRAGRPQFDQHGKAIILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHINAEIVSGTIRHKEDAIHYLTWTYLFRRLGVNPAYYGLEDIDPGT
LSSYLSSLVVSTFEDLEDGGCIKIEEDRVEPTMLGSIASQYYLKYTTVSLFASNIEADTS
LEVFLHVLSGASEYDELPVRHNEENHNAELASKVQYMVDKNLLDDPHVKTNLLFQAHFSR
VELPITDYVTDLKSVLDQSIRILQAMIDVCANSGWLSSTITCMHLLQMVMQGLWCDKDSS
LWMLPCMTDDLVSTLSQRGIFNVLQLLDVPLDSLHFLTKSSNSRLHEELQHFPRIQVRLK
VQKRTAADNSGARLNVRLEKTNRHKRTARAFTPRFPKLKDEAWWLVLANTASSHLYALKR
VSFKDVSTTNMDIPSDVKDFQGMKLIVISDCYLGLDQEYSIEQLV
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atgttgatggaactcccgcgcttaaccaattctctcaggtcaccattcgatgccgatcaa
gcgtatctcaatcgtaaatccttcctccaaaacctcaatcgcactagctatacagctgcg
tctggagagtcggaactggcgcgcaaaatcatttatcggtgggacgaagcttcttttgag
gtgcggcaattgtacaagcaatttgtggtggctgtggttgagttgatgggtggtgaagtg
gtgtctgaggagttccaagaagttgcaataaaggcgtataggctattcagtgggacttct
gaatccgaagtggatgaaagggacagaataattttgtcgaaaaagtttgagttgcaaaaa
cttgttggtcatactgttttggatgcaaacatactgaaagttgcatcactggtggagagg
ctttcttctttgcagaacaaggtacatggatttgactatttacctgaactgaccagtgaa
ggcagtgaggacgtggaatttggagcagatcttgcattccaacctccggctcgctttcta
gtggatatttcaatagagaatggagaagattttttggaggaaactggcacatcatcttcc
aatcatgatggatggtccaataatcttggctctgcgaattctcatactgctgtcagtgca
ggtagttatgacctagagtggttgagagatgcatgtgatagaattgtcagtgctagtact
tcacagcttcctcgagatgaactggcaatgacaatttgcaggattctcgattcagagaaa
cctggagatgagatcgctggtgatttactggattttgttggtgatagctcgttcgaaatt
gttcaggaccttattatgcacagaaaggaccttgttgaaagcatccatcatggacttctt
gtcctgaaatctgatagatcaacttcaaacacacagataaaatatcctagttatgctact
caggtaactgttcaaacagagtccgagaaacaaattgataaactccggcgcaaggaggag
aaaaagaataggcgtgggacggatcatggaactgagcacgacttgtcttcgttttctttc
agttccttacttcaagcaagtgagaagaaaaatatacttgatgatcttgtggggcatggt
gatggggcccagtttgttgccactgcccttcctcagggcactgtgagaaagcattacaag
ggatatgaagaagtcattgttccgcctacaccaactgcaccactgaaacctggggagaag
ctgattgacatcaaggagctagatgacatagcacaagctgcttttcaaggttacaagtct
ttgaaccagatacagagcagaatattccaaacgacttattatagcaacacaaatatactg
gtctgtgcaccaactggggctggaaaaaccaacatagctatgatttctattctacatgag
attggacaacactttaaagatggttatttgcataaagatgaattcaagatagtttatgtt
gctcctatgaaggcattagctgcagaggtcacatcaacattcagccatcggttagccccg
ctaaacataaccgtgagagaacttactggtgatatgcaactctcaaaaaatgagcttgaa
gagacacagatgattgtaactactcctgaaaagtgggacgtcattactcgtaaaagcagt
gatatgtcactctccatgctcgtgaagctcctaatcattgatgaagtacatttgttgaat
gatgacagaggtcccgttattgaagcattagtagctcgcactcttcgtcaggttgaatct
acccaaagtatgatacgcattgttggcctttctgccactttaccaaattatctggaggtt
gcacaatttctgagagtaaatccagacactgggctattcttctttgactcaagctatagg
ccagtacctcttcagcagcattacatcgggatttctgaaaacaactttgcagctcgtaat
gaactgatgaatgagatatgcttcaataaggtggttgattcactgaggcgaggacatcag
gttatggtttttgttcattcgcgcaaagacacaggaaaaactgccgaaaaactgatagat
atggccaaattacatgaggacttcgaccttttcacaaatgcttcacatcctcagcagggg
cttatcaagaaagacgtgttgaagtccagaaataggcaattggtccaattttttgactat
gctgttggcatccatcatgctgggatgctacgcgctgacagaggtctgactgagcggctt
ttctctgagggactattaaaggtactcgtatgcacagcaactttggcgtggggagttaat
ctgcctgctcatactgtggtgattaagggaactcaaatttatgacccaaaggctggtgga
tggcgcgatcttggcatgcttgatgttatgcagatatttgggcgtgctgggagacctcaa
tttgataaaagtggtgaaggcattataatcacgagtcatgaaaaattagcctactatttg
cggcttttgacaagtcaacttcccattgagagccagtttataacctctttgaaagataac
ctgaatgccgaggtggcattgggcactgtaacaaatgttaaggaagcttgtgcttggctg
gggtacacatatcttttcataaggatgaaaatgaatcctctggcatatggcattggatgg
gatgaggtagttgcagatccatcactgagcctgaaacaaagagctctggtatcggatgcg
gcacgagctcttgacaaggcaaaaatgatgcgctttgatgagaaaagtgggaacttttat
tgtacagagcttggtcgcatagctagccacttttacattcattattctagtgtcgaaact
tacaatgaattgttgagacgccacatgaatgatagtgaggtaattgacatggttgcacat
tcttctgaatttgaaaatattgttgttcgagaggaagaacaaaatgagctggaaacgtta
gctcgctcatgtcctttggaaatcaagggtggtccttcaaataaacatggaaaagtgtct
attcttattcagttatacatatccaggggtgcaattgattctttttcactagtttctgat
gcatcttacataagttcaagtttagctcgtataatgcgagctttatttgagatttgtttg
cggcgaggatggagtgaaatgtcttcattcatgctggagtactgcaaagctgtggatcgt
caaatttggccccaccagcatccactcagacagtttgatagagatatttctacagaaata
ttgagaaagcttgaagaaagaggggtggacttggatcgcctatatgagatggaggagaaa
gacattggaactttaattcgctatgcacctggtggaaagttggtgaagcaatacctggga
tatttcccaatggtccagttagttgctactgtaagtccaataacaagaactgttctaaag
gttgatttgaccattacacctgagttcatctggaaggatcgttttcatggtactgctctg
cgctggtggattttggttgaggattctgagaatgaccatatataccactcagagctgttt
acattaacaaagaaaatggccaaaggggagcctcagaagctctccttcactgttccaata
tttgagccacatcctccccagtacttcatccgtgcaatttcagattcatggttgcattca
gagtctttctacactatatccttccagaacctcatgctcccagaggctcatacaactcat
acggaacttcttgacctgaaaccacttcccgtgactgcacttgtaaatggaacttatgaa
gcattgtacagattcacacattttaaccccatacagacgcaggcttttcatgtgctatat
cacacagaccaaaatgttcttcttggagctccgacaggaagtggtaaaaccatatcagct
gagcttgccatgctccatctgtttaatactcagcctgatatgaaggttatctatatagca
cctttaaaggctctcgtgcgagaaaggatgaatgattggagaaagcggcttgtctcgcag
cttgggaaacatatggtggaattgacaggggagtatactccagatttgacagctctgtta
tcagctgacattataatttctacccctgaaaaatgggatggtatcagtcgaaactggcat
tctagatcctatgttaagaaggttgggcttatgatattggatgagattcatttgcttggg
gctgaccgtggacccatattggaggtaattgtatctcgaatgagatatatatcatcacag
acagagcggccagttcgatttgttggtctttcaacagctttagcaaatgcacatgatttg
gcagattggttgggtgttgaagaaattggtttattcaacttcaagcctagtgttaggcca
gttcctcttgaagttcatatccagggatatcctggaaagttttactgcccaagaatgaat
agtatgaacaaaccggcatatgcagcaatatgtactcattcaccaacaaaaccggttctt
atatttgtgtcatctcgtcgtcagactaggcttactgcattggacctcattcagtatgca
gcttcagatgagcacccaagacaattcttggctatacctgaagaattgcttcagatgata
gtctcccaagtaactgatcagaaccttagacacactctgcagtttggtatcggattgcac
catgcaggattgaatgataaggacagatcacttgttgaagaactttttgcaaacaacaag
attcaggtgttggtctgcaccagtacattagcttggggtgtaaaccttccagctcattta
gttattataaagggaacagaattttttgaagcaaaatcaaagagatatgttgattttcca
atcacggatattttacaaatgatgggtcgagctggacggcctcagtttgaccagcatggg
aaagctattattctggttcatgaacccaaaaaaagcttctacaaaaagttcctctatgaa
ccatttccagttgaaagcagcctgagagaacagttgcatgatcacataaatgctgaaata
gtttctgggacaattcgtcataaagaggatgcgatacattatctcacctggacatatcta
ttccgtagattgggggttaatccagcatattatggcttagaggacatagatcctggaact
ctgagttcttacttgtcaagcttagtagtgagcacatttgaggatcttgaagatggtggt
tgcattaaaattgaagaagacagagtggagccaacgatgttgggttcaatagcatctcag
tattatcttaaatacacaactgtatctctgtttgcttcaaatatagaagcagacacatcg
ctggaagtttttctccatgtattgtctggtgcttctgaatatgatgagcttcctgtgcgg
cacaacgaagaaaaccacaatgcagaattggccagtaaggttcagtacatggttgacaag
aatcttctcgatgaccctcatgtgaagacaaatcttctgttccaggcacacttttcccga
gttgaactgccaatcactgactatgtaacagacttgaagtcagtgctggatcaaagtata
cgcattcttcaggcaatgatagatgtgtgtgcaaacagtggatggctctctagtacaatt
acttgtatgcatctcctacaaatggtcatgcagggtttatggtgcgacaaggattcctcc
ttatggatgcttccatgcatgacagatgatcttgttagtacattgagccagagaggaatc
ttcaatgttttgcagttattagatgttcctttggactctttacattttctcacaaaaagt
tccaactcgcggttacatgaggaactgcagcattttcctcgcattcaagtgcgattaaag
gttcagaagcgcactgctgccgataactctggtgcccgtctgaatgtgagattggaaaaa
acaaataggcataagagaacagcaagagcttttactcctcgctttccaaagcttaaagat
gaagcttggtggttggtcctggcaaataccgcctcctctcacctatatgcattgaagaga
gtttctttcaaggatgtctcgaccacaaacatggatatcccatcagacgtgaaagacttc
cagggtatgaagttgatcgtcatttctgattgttatcttggtttagatcaagaatactct
attgaacaacttgtgtga
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integrated database retrieval system
