Salvia splendens (scarlet sage): 121747967
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Entry
121747967 CDS
T07627
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121747967
03015 mRNA surveillance pathway
121747967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121747967
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121747967
mRNA cycle factors
P-body specific factors
121747967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
BSMAP
Xpo1
Motif
Other DBs
NCBI-GeneID:
121747967
NCBI-ProteinID:
XP_041998089
LinkDB
All DBs
Position
9:12920915..12931066
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AA seq
1186 aa
AA seq
DB search
MEPGDGEQQEKHDDERRHDDEEAIARLEEFKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRGVNLSKFVSEAVAAICDAKLKAADIQSAVQIC
SLLHQRYKEFAPSLVQGLLKVFVLGKSVEDLDADKNSRAMKKRSTLKLLLELYFVGVIED
TGIFVNIIKDLTSPEHLKDRDATQTNLSLLASFARQGRFLLGFPLTEQDILEEFLKRLNI
TADQKKIFRKAFQTYYDAAVELLLSEHASLRQMEHDNAKILNAKGELSEENATSYEKLRK
SYDLLSRGVSSLAEALDMQPPVMPEDSHTTRVTSGEDVSSPVASKDSPTLEALWDDDDTR
AFYKCLPDLRAFVPAVLLGEVESKPNEQSSKTQDLPADTTPESDKGQVVIQENPEVSADS
TIVQEDKEGKDNDKEEKDKEKAKDSDKDKGKEDAGRGEIEKDKTKGLDGTNLEALLHRLP
SCVSRDLIDQLTVEFCYLNSKSTRKKLVRVLFNVPRTSLELLAYYSRMVATLSTCMRDVA
SMLLQLLEEEFNTLINKKDQMNIETKIRNIRFIGELCKFKIAPASLVFTCLKACLDDFTH
HNIDVACNLLETCGRFLYRSPETTVRMSNMLEILMRLKNVKNLDPRQSTLVENAYYLCKP
PERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEDYLLKCFLKVHKG
KYGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRVGLELNEYGMEQQRIAYMRFLGELY
NYELVDSSVIFDTLYLILSFGHGTTEQDTLDPPEDCFRMRMVIILLETCGHYFDRGSSKR
KLDQFLIHFQRYILSKCVLPLDVEFDLQDLFVDLRPKMIRYSSFEEVNVALSDLEELERR
VSEKAHNEKYSDSEKTPRRTSSGTLSVNGQSTGNGTEENGEVHEDDAGETDSDSGSGTTE
NIGRDDEETDQDEVGESEDEYDDGRDPASDEDDKVRVRQKVAKVDPQEVADFDRELRALM
QESLDSRKLELRSRPTINMMIPMNLFEGSVKEHHGRGTEGESGDEITYDGIGGSKEVQVK
VLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGGMQ
PLNSSHSGGRVSNRGHSWDGQHRSGGPRYRQHIYHSGAGVYYGRRR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaacccggcgacggagaacaacaagagaagcatgacgacgagcgaagacacgatgac
gaggaagccattgcccggcttgaggaatttaagaaatccattgaagcgaaaatggcgttg
cgtcaaagtaatttgaatcccgagaggcctgacacaggctttctcaggacacttgactct
agcatcaagcgcaatacagcagtcattaaaaaattaaagcaaatcaatgaggagcagcga
gaaggtctaatggatgaattgcgtggtgtaaatttaagcaaatttgttagtgaagccgtg
gctgcgatttgtgatgctaagcttaaagcagctgatatacaatctgctgtacagatttgt
tctttgctccatcagaggtacaaagaatttgctcctagtcttgttcaaggtctcttaaaa
gtttttgtactgggaaaatccgtggaggatctcgacgcagacaaaaattcaagagccatg
aagaagcggagtaccttgaagcttctcttggagctttactttgttggggttatagaagat
actggtatatttgtgaacatcattaaggatcttactagcccagagcatttgaaggatcgt
gatgcaacacagacaaatttgtcccttcttgctagttttgctcgtcaaggaaggtttctt
cttggatttccattaacagaacaagatattcttgaagagtttcttaagagacttaatatt
acggcagatcagaaaaaaatcttccggaaggctttccagacttactatgatgctgctgtg
gaacttcttctatctgagcatgcttcacttcgccaaatggagcatgataatgcaaagatt
ttgaatgccaaaggtgaattgagtgaggaaaatgccacatcatatgaaaagctgcggaaa
tcgtatgaccttctaagtcgtggcgtctcatctttagcagaagcacttgatatgcaacct
cctgtgatgccagaggatagtcatacgactagagtcacatcaggggaggatgtttcatct
cctgttgccagcaaagattctcccactctcgaagccctgtgggatgatgatgatactaga
gccttctacaagtgccttccagatcttagagcatttgttcctgcggttttgcttggagag
gttgaatcgaagccgaatgaacaatcttcaaagacccaggatctgccagctgatacgact
cccgagtcagataaaggtcaagttgttatccaagaaaatcctgaggtttctgctgattct
actattgtacaagaggataaagagggcaaagataatgataaagaagaaaaggacaaggag
aaagccaaagactctgacaaagataagggtaaggaggatgctggaagaggagaaatcgaa
aaggataaaaccaaaggtcttgatggaactaatcttgaagctttactgcataggcttcca
agctgtgttagccgtgatctgattgaccagctcacagttgagttttgctatcttaactca
aagtccactaggaaaaagcttgtgagggtattgttcaatgtgccaagaacatctcttgag
ctgttggcgtactactcacggatggttgctacactgtctacgtgtatgagagatgtagca
tccatgctcttacagttgttggaggaagagttcaatactttaattaataagaaggatcaa
atgaatattgaaacaaaaatcaggaatatacgatttattggagaactttgcaagtttaaa
attgctcctgccagcttagtttttacctgtctaaaggcttgtttagatgatttcacacac
cataatatagatgtcgcttgcaatctacttgagacgtgtggccgctttctctaccggtcc
cctgagaccactgttcgcatgtcaaacatgctagagatactgatgcgcttgaaaaatgtt
aagaatttggatccccgtcaaagcacattggtggaaaatgcttattacttgtgtaaacca
ccagaaagatctgcacgagtctccaaagttcgtcctcctttacatcagtatattaggaaa
ctacttttctcagatcttgataagtcctccatcgagcatgttctaagacaattgcgcaag
ctaccttggagtgaatgtgaggactatcttttgaagtgttttctgaaggttcacaaaggg
aaatatggtcagattcatttgattgcatcacttactgctggtctgagtcgctatcatgat
gactttgcagttgctgttgttgatgaggttttggaggaaattagagtgggtttagagtta
aatgaatatggaatggagcaacaacggattgcatacatgcgtttcttgggggaactgtat
aactacgaacttgttgattcatctgtcatttttgatacgctctatctaattctttctttt
ggacatgggacgacagagcaagatacattggatcctccagaggactgttttcgtatgaga
atggtcatcatacttcttgagacatgtgggcattattttgatagaggttcatcaaaaagg
aagcttgatcagttcttgatacacttccagaggtatattctgagcaaatgtgtccttccc
ctggatgttgaatttgatctgcaggatttatttgttgacttgaggccaaagatgatccgt
tattcatcatttgaggaggttaatgttgctctatctgatcttgaagaacttgaacgtaga
gtttcagagaaagctcataatgaaaagtactcggactcggaaaaaactccgcggaggacg
agttctggcactctatctgtcaatggacaaagtactggtaatggcactgaggaaaatggt
gaagtgcacgaagatgatgctggggagacggatagtgactctggaagtggcaccactgag
aacattggtcgcgatgatgaagaaactgaccaagatgaggttggtgaaagtgaagatgaa
tatgatgatggacgggatcctgcttcagatgaagatgataaggttcgtgtaaggcagaag
gtagccaaggtagacccacaggaggtggctgattttgaccgggaactgagagctctaatg
caggaaagtttggattcaagaaagctagagttgcgctcacggccaacaataaatatgatg
attcccatgaatttgttcgagggctcggtcaaggaacaccatggaagaggaactgaaggt
gaaagtggtgatgagataacatatgatgggattggtggaagcaaggaagtccaggtgaag
gtgcttgtgaagcgtggtaacaagcaacagacaaagcagatgtatatcccccgcgattgc
tctcttgtgcagagcacaaagcaaaaggaagcagccgagctagaagagaaacaagacata
aagcgtcttgtcctagaatacaacgatagagaagaggaagaactgaacggaggtatgcag
ccactaaactcatctcacagtggaggtagagtgtcaaacaggggccattcatgggatgga
cagcataggtctggagggccacgctatcggcagcatatttaccattctggtgccggcgtt
tactatggaaggagaagatag
DBGET
integrated database retrieval system
