Salvia splendens (scarlet sage): 121747982
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Entry
121747982 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121747982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121747982
03041 Spliceosome [BR:
sspl03041
]
121747982
03009 Ribosome biogenesis [BR:
sspl03009
]
121747982
03016 Transfer RNA biogenesis [BR:
sspl03016
]
121747982
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121747982
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121747982
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121747982
Complex C
U4/U6.U5 tri-SnRNP related factors
121747982
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121747982
Transfer RNA biogenesis [BR:
sspl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121747982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121747982
NCBI-ProteinID:
XP_041998110
LinkDB
All DBs
Position
9:7455399..7463894
Genome browser
AA seq
995 aa
AA seq
DB search
MVSVKRKPLGDATEGCESPPMKQRREHGNDNENGLIDEAVTCLHQVSYPEGYQPSASSNQ
QREAKPAKEFPFSLDPFQQEAIKCLENGESVMVSAHTSAGKTVVGLYAIAMSLLNKQRVI
YTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREV
AWIIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVLQQPCHI
VYTDYRPTPLQHYIFPCGGDGLYLVVDEKGKFREDSFQKALNALIPTSEDKRKENGKVPK
GVLVGKSGEDSDIFKMVKMIILRQYDPVICFSFSKRECEFLAIQMAKMDLSDDDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDE
KLEPSTVKFMLKGSADSLNSAFHLSYNMLLNQIRAADADPENLLRNSFYQFQADRAIPDL
EKQAKILEAERDSIIIEEEDSVENYYSLIKQYKTLKKEIRDTVFSPKNCLPFLQPGRLVS
IQCTKSDEDSPSFSLQDEVTWGVIINFERVKVASEDDANKKPEEASYTVDILTRCRVHKD
EIAKKTIRIVPLKEPGEPAVISVPISQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVLV
RFAKEGVPILDPEDDMRVQSSSYRKATRRIEALENLFEKHKVARSPLIEQKLKFLHTKKE
LTAKIRSLKKAMKSSSVLAFKDELKARKRTLRRLGYITSDDVVELKGKVACEISSAEELT
LTELMFNGVLKDIRVEEMISLLSCFVWQEKLQEAQKPRDELGLLFTQVQETARKVAKVQL
ECKVQIDIDNFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEELLQQL
IQAAKSIGEKDLEVKFEEAVTKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggtttcagtcaagagaaagccgttgggagatgcgacggagggctgcgagtctccgccg
atgaagcagcggagagagcacgggaatgataatgagaatggtttaatagatgaagcggta
acttgccttcaccaagtatcgtatccagaggggtaccagccgtccgcttcgagtaatcag
caacgtgaggcaaagcctgccaaggaattccccttttctcttgatccttttcagcaggaa
gctattaagtgtctcgaaaatggcgaatccgtcatggtctctgcgcatacatctgcagga
aagacagttgtgggcttgtatgccattgcaatgtcgctgctcaacaagcaacgtgtgata
tatacatctccaattaaagctcttagcaaccagaaatatagagagttcaaagaagaattt
tcggatgttgggttgatgacaggtgatgtaactattgatcccaatgcgtcttgcttggtt
atgaccactgagatttggcgaagcatgcaatacaaagggtcagaaattactagggaggta
gcctggattatttttgatgaagtgcattacatgagagacagagagagaggggtcgtgtgg
gaagagagcattgttatggccccgaggaactcccgatttgtgtttctctctgctacagtg
cctaacgcaaaggagtttgctgattgggttgcaaaggtgcttcagcaaccatgtcatatt
gtttataccgattatcgaccaacaccccttcagcattacatcttcccttgtggaggtgat
ggcctttacttagtggttgatgaaaagggtaagtttcgtgaggatagctttcagaaagct
ctaaatgctctgattccaaccagtgaagacaaaaggaaagaaaatggaaaagtgccgaaa
ggtgtacttgttggtaaatctggtgaagatagtgatatatttaagatggtgaaaatgatc
attttgcgacagtatgatcctgtcatatgtttcagttttagcaaaagagaatgtgaattt
cttgctatacagatggcgaaaatggatctaagtgacgacgatgagaaagtaaacattgaa
actatcttctggagtgctatggatatgctgtctgatgatgataagaagcttccacaggtt
tcaaatatgctgccccttttgaaacgaggcataggtgtacatcactctggtttgcttccc
atactgaaggaagtcattgaaatattgttccaggaaggatttatcaagtgcttgtttgcc
acagagacctttagcatcgggctaaacatgcccgctaaaactgtcgtctttactaatgtt
cggaaatttgacggagataagttcagatggatatccagtggggagtacatacaaatgagt
ggccgagctggtcgccgaggaattgatgatcgggggatttgtatccttatggttgatgag
aagctagagccttcaacagtgaaatttatgttgaaaggaagtgcagattctttgaacagt
gcgtttcacttgagctacaatatgcttttaaatcaaatacgagctgcagatgcagaccct
gagaatttgcttcgaaattctttctatcagtttcaggcagatcgtgccattcctgatctt
gagaaacaagcaaagatccttgaagcagagagggattctattatcatagaagaagaagat
agcgtggaaaattattactcccttataaaacaatacaaaactctgaaaaaggaaatccgt
gatacagttttttctccaaaaaattgtttgccttttctacagcccggaagacttgtttct
atacaatgcacaaagagtgatgaggattcgccatcattctctctgcaggatgaggtcaca
tggggagtcataataaattttgagagggttaaagttgcctctgaagatgatgcaaacaag
aagcctgaagaggcaagctatacagtggatattctcacgaggtgcagagtgcataaggat
gaaattgctaaaaaaacaattagaattgttcccttaaaagagcctggagagcctgctgtt
atttcagtccctatttcacagattgatagcttaagtagtgtccggctaataataccaaag
gatcttctcccattagaagctcgagaaaatactttgaagaaagtgtctgaagttttggta
agatttgcaaaagaaggtgtacctattctagaccctgaagatgacatgagggttcaaagc
agctcttacaggaaggcgacaaggcggatagaagcacttgagaatctttttgagaagcac
aaagttgctagatctcctctgattgaacagaagctcaaattcctgcacacgaagaaggaa
cttaccgcaaaaattagatctcttaagaaagcaatgaagtcttcatcagtgttggcattc
aaagatgaattaaaagcaaggaaaaggactcttaggagactgggatatattacaagtgat
gatgttgttgagctgaagggaaaagttgcttgtgaaatcagcagtgcagaagagttgaca
ttgacagaactcatgtttaatggggttctaaaggatataagggtggaggagatgatatct
cttctgtcatgttttgtttggcaagaaaaactacaggaagcccaaaagcctcgtgatgag
cttgggttgctttttacacaagtacaggaaacagcacgtaaggtggctaaggttcagctt
gagtgcaaggtacagatagatattgataatttcgtgagctctttcagaccagatatcatg
gaggctgtctatgcttgggctagaggatctaaattctacgaaattatggagatgacacct
gtttttgagggcagcttgatccgagcaatcaggagactggaagaactcctccagcagctg
atacaagctgcaaaatcaatcggtgagaaagatcttgaagttaaattcgaggaagctgtc
accaagatcaagagagatattgtctttgctgcatcattgtacctatag
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