Salvia splendens (scarlet sage): 121748104
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Entry
121748104 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121748104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121748104
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121748104
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121748104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121748104
NCBI-ProteinID:
XP_041998254
LinkDB
All DBs
Position
9:complement(24656717..24667005)
Genome browser
AA seq
1690 aa
AA seq
DB search
MAATEMVRSVRFGFMTDKEVRKQSVVKITNPNLLDTLDKPIPGGLYDLAMGPLVDGAECK
SCGQQSFNCSGHCGHIELVSPAYNPLLVKMLSNILNKACFYCFHFRSSKAEAENCVSQLK
RIKEGNIVAAKKLSLRQKMIDKKKMDWAEVEDVVDPEDSQGSNVSHSVVVSDVENDHKHE
KEAFWDSTLLTESMSVLNEFLKSKEKKCKNCKRSNPKITKPTFGWFHVKGISSTQLRANA
ILSSGLDVTHSGGGEDRPSSEVLNASDCSWKDGSDTAEAHSYATSDSPKTPSQKRRKQTK
FQNPGSEEKADLFSGPLLPSEVRGILRRLWENEAELCSYISDIQHQHDTIFEKIAGYSMF
FLETVLVPPIKFRPPAKGGDSVMEHPHTVLLGKVLQANIALGNAHTNNSERSRIISRWMD
LQQSINVLVDSKTASSQSSKDGVMGICQFLEKKEGLFRQKMMGKRVNFACRSVISPDPYL
AVNEIGIPPYFALRLTYPERVTPWNAGKLRDAVINGPDIHPGATTYVDSVSTVKLPKNKM
TRVAISRKLPSSRGVVTQSGKIDEHEFEGKTVLRHLQDGDIVLVNRQPTLHKPSIMAHVV
RVLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDT
VRGLIQDHIVAAVLITMKNTFFNRSEFSQLLYGSGVFAAGPGSHPGERKVSVLDSEGLVE
SVLPAVWKPEPLWTGKQVITALLNHITRGCAPCIVENQGKIPKNYFASAKYKKGEEDQDH
NAEHDLLIWKNELVRGVIDKAQFGKFGLVHTVQELYGANSAGILLSALSRLFTLFLQFHG
FTCGLDDLIILPNYDIQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKVISSHR
ESSTATLDMKMKNKLTNRLTREGSDILKHLLTRGLLKPFPKNCISVMTTTGAKGSTVNFQ
QISSYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMA
GREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVLKTS
FLKNFKALQDNRETICEKFQNQRQFNSYINELPKGLEEQARCYIRDVQEKSSEKQILSRH
KGKKKEREKEKALAEEQAFLALVKQKYLSSLAESGEPVGVIAAQSVGEPSTQMTLNTFHL
AGRGEMNVTLGIPRLQEILMTAPNVIKTPVLTCPFADLRSKRDVVALVSKVKRVSVADLV
ESMEVGISFDRHEVARIYKLKMKLKETEFIPSEDIKDTLETTFLYELEDAIENHIIFLSR
ISGIKNFMSSSKSAVSGETDEDESGEKSTEVDNDDDDDDDEDEEKGGDDLDADAQKRKQQ
ASDERDYSDESDVDHGEDELSPDTEKSKSEVEDPEDMDTSKEDGTIHSDEKEEQKADEGG
GTSARDFYSGKGFSSKKIKRAVKLECKGLSYEVHFRFTNEPHLLLDQLAQKTAKKVFIKR
TGKMSQCRLVQYDPDEKTVIWNDTKKPKRGENRPEAGADDAVYWAMKASGVDFKSLWEMH
ADLDVNRLYSNNVHAVLNTYGVEASRETLIREVKQVFDIYGVKIDYRHLSLIADYMTHTG
GYRPMSRHGCISESISPFLKMSFEMASKFIVEAASLGLKDDLETPSSRICLGLPVKVGTG
CFDLMQKLDS
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaactgagatggtgcgctcggtccgttttggctttatgactgataaagaagtg
aggaagcagagtgtggtgaaaatcacgaatcctaatttgcttgatacattggacaagcca
attcccggcggactatatgatttagctatgggacctctcgttgacggcgctgagtgtaaa
tcgtgcggccagcaatcgtttaattgctctggtcattgtggccacattgagcttgtttcg
ccagcttacaatccattgcttgtgaaaatgctgagtaatattctcaataaagcatgcttt
tattgttttcattttcgatcaagcaaggcggaggctgagaactgtgtttctcaattgaaa
aggataaaagaaggtaacattgttgcagcgaagaagttgagtttgcgacagaagatgata
gacaagaaaaagatggactgggccgaagtagaagatgtagttgatccagaggatagtcaa
gggagtaatgtatcacattctgtagtcgtttctgatgtcgaaaatgaccacaagcatgag
aaagaggcattctgggactccaccttgctaactgaatctatgtcagttttgaatgagttt
ttaaagagtaaagagaagaagtgcaagaactgcaaacgcagtaacccaaagatcaccaaa
ccaacatttggatggtttcatgtgaaagggatttctagtacccaattgagagcgaatgcc
atactaagcagtgggttagatgtgacgcacagcggaggtggtgaggataggccttcctct
gaggtgttaaatgctagtgattgttcatggaaggatggctctgacacagctgaagcccat
tcatatgctacctcagatagccccaaaacacccagccaaaaaagacgaaagcaaacaaaa
tttcaaaatccggggtctgaggagaaagctgatttattttcaggacctctcttaccttca
gaggtcagaggtattctgagacgtttgtgggaaaatgaagctgagctttgctcatatata
agtgatattcagcaccagcatgatactatttttgaaaaaatagcaggctactcaatgttt
tttctagagactgttctcgtgcctcctattaaattcagacctccggccaaaggtggcgat
tctgtgatggagcatccacacactgttctattagggaaggtgctgcaggcaaatatcgct
ttaggaaatgctcacacgaataattctgaacgctcaaggattattagtcgctggatggat
cttcagcaatctatcaatgtattagttgatagcaaaactgcgagtagtcaatcttcaaaa
gatggggttatgggaatttgtcagttccttgaaaagaaagagggtttattccgtcagaag
atgatgggcaaaagggtcaatttcgcttgccggtctgtcatatctccagacccttacttg
gcagttaatgaaattggaattcctccatactttgctttgagattgacatatccagagaga
gtgactccttggaatgctggaaaattgagggatgctgtcattaatgggcctgatatccat
cctggagctacaacttatgtggatagtgtgtccactgtaaagctaccaaaaaataaaatg
acgcgtgtagcaatatctagaaaattaccctcttcacggggtgtcgtaacacaatcgggg
aagatcgacgagcatgagtttgagggcaagactgtccttcgccacttgcaggatggggat
attgtgcttgtaaatcgtcagcccacgctccacaagccaagtataatggctcatgtagtt
cgtgtattgaaaggagaaagaactctccgcatgcattatgcaaattgcagctcatacaat
gcagattttgatggtgatgaaatcaatgtgcattttcctcaagatgaaatttctcgtgca
gaagcttacaacattgttaatgctaatgaacaatatattgttccaacaaagggtgacact
gtgagaggcttgattcaggatcatattgtcgctgctgtgcttattacaatgaagaataca
ttttttaatcggagtgaatttagtcagctgctttatgggtctggtgtatttgcagctggg
cctggttcgcatccaggagaacggaaagtttcagtattagattctgaaggtctggtggaa
tctgtcttgcctgcagtatggaaaccggagcctctttggactgggaaacaggtcattaca
gcattactgaatcacatcacacgaggttgtgcaccttgtattgttgaaaatcaagggaaa
attccgaagaactattttgctagcgccaagtacaaaaaaggagaggaggatcaagatcac
aatgctgaacatgatttattaatttggaaaaatgagctagtacgtggtgtcatcgacaag
gctcaatttggaaagtttggcttggttcacacagtgcaagagctttatggagctaatagt
gcaggaattttgctttctgcattaagccggttattcacactcttcttgcagtttcatggg
ttcacatgtgggctagatgaccttatcatattacccaattacgatatccagagaaaggag
aaacttgaaggagaagatgtaggtgaagaggtccactgcgattttgtcaagttcaaacct
gggcaaataggccctgaagagctgcagttggaaattgaaaaagtcatatccagtcataga
gaatcttcaactgcaaccttggacatgaaaatgaaaaataagttgacaaataggctaact
agggaaggttctgatatactcaaacatttgctgactagagggttgttgaaaccttttcca
aagaactgcatctccgtaatgaccactacaggcgctaagggtagtacggtgaatttccaa
caaatatcttcctatctaggacaacaagagttggaaggtaaaagagtgcctcgaatggta
tctgggaagactttgccttcctttcctccctgggattacactgccagagcaggaggattt
atcactgatcgctttctttccggcctccgaccacaggaatattacttccattgtatggct
ggccgtgaagggttagttgacacagcagtaaagacatctcgcagtggatatctacaacgt
tgtctgataaaaaatcttgagagtctcaaagtttgttatgactatacagttcgtgattct
gatggttcgatcgttcaattttactatggagaagatggtgttgatgtcctcaagacaagc
ttccttaaaaattttaaggcactgcaagataatcgagaaactatctgcgagaaatttcag
aaccagcgtcaattcaacagttacattaacgaattacccaaggggcttgaagaacaagcc
aggtgctatattcgtgatgtgcaagaaaaatcatcagaaaaacaaattctttcaagacac
aaaggtaaaaagaaggaacgtgagaaagaaaaggcattagcagaagagcaagccttttta
gcgttggtaaagcagaaatatctatcgagtctcgcagaatcaggagaaccagttggtgtc
attgcagctcagtcagtaggcgaaccatcaactcagatgacactcaacacttttcatctg
gctggccgtggagaaatgaatgtgacccttggtattcctcgtctccaggagattttgatg
actgcaccaaatgtcattaagactcccgttttgacctgcccattcgctgatttgagatcc
aagcgtgacgtcgtggccctagtttcaaaggtgaagagagtctcagtggcggatctggtg
gagagtatggaagttggaatctcgtttgatcggcatgaggtggctagaatttataagttg
aaaatgaaactcaaagagaccgagtttataccatcagaggacattaaggatacccttgaa
actacgtttctgtatgaattggaggatgcaatcgaaaatcatatcattttcctctccaga
atcagtggcattaaaaacttcatgtctagttcaaaatcagcagtatcaggtgaaactgat
gaagatgaatcaggggaaaaatcaacagaagtcgacaatgacgatgacgatgatgatgat
gaagatgaagagaagggtggggatgacctcgatgcagatgcacagaagagaaagcaacaa
gcttcggatgaaagggactatagtgatgaatctgatgtcgaccatggtgaagatgagtta
tctccggatacggagaagagcaagagcgaggtagaagatcccgaggatatggataccagc
aaagaagatggaaccatacactcagatgagaaagaggaacaaaaagccgatgagggcgga
ggtacatccgcaagagatttttattcaggaaaaggtttttccagcaagaaaataaaacgt
gctgtgaagttggaatgcaaaggattgtcgtatgaagtccacttcagatttaccaacgag
cctcatttattgcttgatcagcttgcccagaaaacagcaaagaaggtattcatcaagagg
actggcaagatgagccaatgcagattagtacaatacgaccctgatgagaaaacagtcatc
tggaacgacaccaagaagccgaaaaggggcgagaacagaccggaagcgggtgcagacgac
gcggtgtattgggcaatgaaggcttctggagtggacttcaagtcgctgtgggagatgcat
gcggatcttgacgtgaatcgtctctattcaaacaatgtgcacgcggtgctgaacacatat
ggtgtggaggcctccagagagactctgataagagaggtgaagcaggtgttcgatatctat
ggggtgaagattgactaccggcatttgagcttgatcgcagattacatgacccatacaggt
gggtataggccaatgagtcggcatggatgtatatcagagtcaatatctccgttccttaag
atgtcgtttgagatggcgtccaagttcatcgttgaagcggcgtctctggggctaaaagat
gacctagagaccccgtcgtccaggatctgcttaggtctgcctgtcaaagtcggtacaggc
tgttttgacttgatgcagaaattggattcttga
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integrated database retrieval system
