Salvia splendens (scarlet sage): 121748254
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Entry
121748254 CDS
T07627
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121748254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121748254
03036 Chromosome and associated proteins [BR:
sspl03036
]
121748254
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121748254
Coactivators
SAGA/TFTC/STAGA complex
121748254
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121748254
STAGA complex
121748254
TFTC complex
121748254
SAGA complex
121748254
SLIK complex
121748254
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_Aladin
DSE1_N
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ASA1
CFAP251_N
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_DCAF4
PAC11
Beta-prop_Vps41
Beta-prop_NOL10_N
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Tricorn_2nd
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_NWD2_C
PROPPIN
Beta-prop_ACSF4
WD_LRWD1
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
121748254
NCBI-ProteinID:
XP_041998427
LinkDB
All DBs
Position
9:13223999..13231602
Genome browser
AA seq
664 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLVLQQEKQQSSSNASSTAQIVPDIAKQFLSFSEMDGP
AQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEAQSFFNSFRGDH
EVMHIRDLQKLEGVLSPSHLKEMEFAHSLRQKKVGIKICQYSYDLLLQYLHKSQSITMLG
IVNEHINLQVSPGQPNSIADDAEYVTFFGGDQDTANLLNQKEIHWGLLEDSLEERLEKIG
APSMDSEMADGEAREGELEENKKRSDVKQGTTTKKLKKDKVAGATAKAHRSDSVTAPCVK
PELAQPVIPLEVEHSILEDLRNRVQLSSMALPSISLYTFINTHDSLNCASISHDGSMVAG
GFSDSSLKVWDMAKLGQQNVTSPSQGENDLAANEPSSTAGGRNYTLFRGHAGPVHSATFS
PFGDFILSSSSDSTIRLWSSKLNANLVCYKGHNYPVWDVQFSPLGQYFASASHDRTVRIW
SMDRIQPLRIMAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIFIGHRSMI
LSLAMSPDGRYMASGDEDGTIMMWDLASGRCLAPFVGHGSCIWSLAFSCEGSLLASGSAD
CTVKIWDVATSSRVPKSDENGGKNGNTSRPRSLKTLLTKSTPVYALQFSRRNLLFAAGAL
SKQL
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagagatcgataaagtggttctcgcctacctggacaagaggggtttcaag
caagccggcctcgttcttcagcaagagaagcagcaaagcagcagcaatgcatcctccact
gcacagattgttcctgatattgctaaacaattcctctctttctctgaaatggatggacct
gctcagtaccaagaaggttatagcaagctacggtcatgggcttatagttctctggatcag
taccagcatgagttggttagagttttgtatccagtatttatccatgcatttatggatctt
gtggcgaaaggtcatattcaagaagctcaatctttttttaatagctttcgaggagatcat
gaagttatgcatatacgcgaccttcaaaagctagaaggtgttctttctccctcacatctg
aaggaaatggaatttgcacattctctaagacagaaaaaagtgggcatcaagatatgccaa
tactcttatgacctacttctacaatacttgcataaatctcaatcaattacaatgcttgga
attgtcaacgaacacatcaacttacaagtttctcctggacaaccaaactccattgctgat
gatgctgaatatgtcacatttttcggaggtgaccaggatactgctaatttgttaaaccag
aaagaaattcactgggggttgcttgaagattctctggaagaaaggttggaaaagattggt
gctcctagtatggattccgaaatggcagatggtgaagcgagagaaggtgaactggaagaa
aataagaaaagatctgatgtcaagcaaggcactacaacaaaaaagttgaaaaaggataag
gttgctggtgctacagcaaaagctcatcgttcagatagtgttactgcaccatgtgtaaaa
cctgagctagcacagccagtaataccactagaggtggaacattctattcttgaagatttg
aggaaccgtgtgcagttgagtagcatggcattgccttccattagcttatacacttttatc
aacactcacgacagcttgaattgtgcttcaatatctcatgatgggtcaatggtggccggt
ggattttcagactcatcattgaaggtttgggacatggcaaagcttgggcaacagaatgta
acctctccctcgcagggtgaaaatgatttggctgccaatgagcctagctcaactgctggg
ggaagaaattacacattattccgaggtcatgccggaccagtgcattctgccacttttagt
ccgtttggggatttcattctgtcttcttcatcagattctacaattcgactatggagctca
aaactgaatgcaaatcttgtctgctacaagggtcataattaccctgtatgggatgtacag
tttagtccacttggccagtattttgctagtgcttcacatgatcgcacagtaaggatctgg
tcgatggacagaatacagcctctaaggattatggcaggtcatttatctgatgtagattgt
gtgcaatggcatgcaaattgcaactatcttgctaccggatctagtgacaaaacagtgcgc
ctatgggatgtccagagtggcgagtgtgttagaatattcataggtcacagaagtatgatc
ttaagtttggcaatgtcacccgatggtcgctatatggcatctggcgatgaagatggtaca
ataatgatgtgggatcttgcatctggacgctgccttgccccattcgtcggccatggctct
tgcatttggtcactggctttcagctgtgaaggttcgcttctagcttccggttctgctgac
tgcactgtgaagatatgggatgtagctacaagctcaagagtgccaaaatcagatgagaac
ggcggcaaaaatgggaacacaagcagaccgagatcgctgaaaaccttgctcaccaaatct
actcctgtctacgctctgcagttctccagaagaaaccttttatttgctgccggcgctctc
tcaaagcagttgtag
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integrated database retrieval system
