Salvia splendens (scarlet sage): 121748302
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Entry
121748302 CDS
T07627
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121748302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121748302
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121748302
Complex C
U5 SnRNP specific factors
121748302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121748302
NCBI-ProteinID:
XP_041998500
LinkDB
All DBs
Position
9:13898563..13909653
Genome browser
AA seq
2372 aa
AA seq
DB search
MWNNNMNNPAPPGTSGAGAMPLMMAPPGTSGAQPIAPPGTSGAQPVAPPMPSLLPSYTVV
PTESQLDERARKWMQLNTKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHD
KRVYLGALKFVPHAVYKLLENMPMPWEQVREVKVLYHITGAITFVNEIPWVVEPIYLAQW
GTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVH
TWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFT
AKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPR
KVKLSIYHTPMIMFIKTEDPDLPAFYYDPLIHPITSTSKDRRDKKLYDEEDDDFALPEGV
EPLLVGTPIYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWFKEHCPPSYPVKVR
VSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNML
NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQF
RLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKG
PGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLE
LRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVK
SKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPE
EAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREEL
GLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQ
YLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSDGQCVVMLQTKFEKF
FEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYY
GLVLDLLLLGLTRASEIAGPPQMPNEFITFHDARVEIRHPIRLYSRYIDKVHILFRFTHE
EARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRS
ITTLEWENSFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKE
RTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQE
LLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYS
KQTDTGVSHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRL
TLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGK
LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQR
SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQ
KIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPS
LVQESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMI
GLDLAYNLHSAFGNWFPGSKPLIAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYL
SSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH
TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIV
IKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKTVSSYTAFSRLILILRAL
HVNNEKAKMLLKPDKTIVTEPHHIWPSLTNEQWVKVEIALRDLILSDYATKNNVNTSALT
NSEIRDIILGAEITPPSQQRQQIAEIEKQAKDSSQLTAVTTRTTNVHGDELIVTTTSPYE
QAAFGSKTDWRVRAISATNLHLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQ
VAGYLYGVSPPDNPQVKEIRCIAMAPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPN
EQPQLSPQDLAAHARILSNNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGKSNTD
AASNPHGYLPTYYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPRE
FYHEDHRPTHFLEFSNLEEGDIAEGDREDTFT
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacatgaacaacccggcgccgccggggacgagcggagcgggagctatg
ccgctaatgatggcgccccctggcacgagcggagctcagcctattgcgccgcctgggact
agcggagctcagccagttgcgcccccgatgccgtcgttgctgccttcatacactgtcgtg
ccgaccgagtctcagttggacgagagagcgaggaagtggatgcagctgaacacgaagcgg
tatagcgacaaacggaaattcggatttgttgagacgcagaaggaggatatgcctcctgaa
catgtcaggaaaatcattagggaccatggtgacatgtcgtcaaagaaatatcgccatgat
aagcgtgtctatttgggtgctctcaagtttgtgccacatgctgtgtacaaacttctcgaa
aatatgcctatgccgtgggaacaggtccgtgaagtgaaggttctgtaccacattactggg
gctattacctttgtaaatgaaatcccttgggttgttgaaccaatctatttggcacagtgg
ggtaccatgtggatcatgatgcgaagagagaagagagatcgtcgacatttcaagagaatg
cgtttcccaccttttgatgatgaagagcctccattagactatgctgacaatctccttgat
gtggatcccttagaaccaattcagttggaattggatgaggaagaagattcagctgtgcat
acctggttctatgaccataagcctcttgtcaagacaaagcttataaatgggcctagctac
cgaaaatggcatctttcgcttccaatcatggcgacacttcaccggcttgctggccagttg
ctatctgatttgattgatcgaaattacttctacctttttgacatggagtctttcttcact
gccaaggctctcaacatgtgtatacctggtggtcctaagtttgagcctttgtatcgggac
atggagaaaggcgacgaggactggaatgagtttaatgatatcaataagcttatcattcgc
tcacctctcaggacagaatacaggattgcttttccccatctttacaacaataggccgagg
aaagtaaagcttagtatatatcacactccaatgattatgttcataaaaacagaggatcct
gatttacctgctttctactatgatcctctaatccatcccataacaagtacaagtaaagat
aggagagataagaagttatatgatgaagaagacgatgattttgctttgcctgagggtgta
gaaccgttactagttggcactcctatatatacggacacaactgctgctggtatttctctt
ctgtttgccccacgcccttttaacatgcgatctggacggatgaggcgtgccgaagatata
cctcttgtatctgagtggttcaaggaacactgccccccgtcttaccctgtcaaagttcgc
gttagctatcagaaattgttgaaatgttttgtgttgaatgagctgcatcaccgcccacct
aaggctcagaagaagaagcacctgttcaggtccctccaagctacaaagtttttccagact
actgaacttgattgggctgaagctggtctgcaagtgtgcaagcaaggatacaacatgctg
aacctactgattcataggaaaaacttgaactaccttcatctggactacaacttcaacttg
aagcctgtaaagactctaaccactaaggaacgcaaaaagtcacgtttcggtaatgccttc
catctttgccgtgaaatcctgcgattgacaaagcttgtagttgatgcaaatatccagttc
cggctgggaaatgttgatgcgtttcagttggctgatggcctacaatacattttttcacat
gttggacaattgactggtatgtaccgttacaaatatcggctcatgcgccagattcggatg
tgtaaagacttaaagcatctgatctattaccgatttaatactgggccggttgggaaaggt
cctggttgtggcttttgggcacctatgtggagagtgtggttgtttttcctccgtggtata
gttcctctcctggaaaggtggcttggaaatttacttgctaggcaatttgaaggaaggcat
tccaagggagtggcgaaaactgtgactaaacagcgtgttgaaagccactttgatcttgag
cttcgtgctgctgtcatgcacgatgtcctcgatgcaatgccagagggtattaagcaaaat
aaagctaggactattttgcagcatctgagtgaggcttggcgttgctggaaagcaaatatt
ccttggaaggtaccgggtttgccagttccaatcgagaacatgatattgcgttatgtcaaa
tcgaaagctgattggtggaccaatgttgctcattataatcgagaacgtattagaagggga
gccacagttgacaagactgtttgccgaaagaatcttggtagattaactcgtctttggttg
aaagctgaacaggaacgacaacataactacttgaaagatggtccatatgtcactcctgaa
gaagcagtggcaatatacactacaactgtgcattggctggaatctagaaaattctctccg
attcctttcccccctctgtcttacaagcatgataccaaactcctcatccttgctctggag
cgattgaaggagtcgtatagtgttgctgtaaggttgaaccagttacagagagaagaattg
ggcttgattgagcaggcatatgacaaccctcacgaggctttgtcgcgtatcaaacgtcat
ttgcttactcaacgtgccttcaaagaagttggcattgagttcatggatctatacagctat
ctaattcctgtttatgagattgaacctcttgaaaagatcaccgatgcatatctggaccag
tatctgtggtatgagggtgacaaacgtcatcttttccctaattggattaagcctgcagat
tcagaaccaccacctctgttggtttacaaatggtgtcaaggcataaacaacctacaaggc
gtatgggacactagtgacgggcagtgtgttgtgatgcttcaaactaaatttgagaagttt
tttgaaaagatcgatttaaccatgctcaacaggcttctgcgtttggttctggaccataat
attgctgattatgtcactgcgaagaacaatgttgttttatcgtacaaggacatgagccat
acgaattcttatggactcatccgtggtcttcagttcgcttcattcgttgtgcagtactat
ggacttgttctggatctactgcttcttggtctgacacgagccagtgagatagctggtcca
ccccagatgcctaatgagttcattactttccacgacgctagagtggaaattcggcatccg
atcagactgtactctaggtacattgacaaggtgcatatactgttccggttcactcatgag
gaggctcgggatcttatccagcgttatcttactgagcatcctgatcccaacaatgaaaat
atggttgggtataataataagaagtgctggccaagagatgctagaatgagactcatgaag
catgatgttaatcttggtaggagtgttttctgggacatgaagaatcgacttccaagaagt
atcaccacacttgaatgggagaacagctttgtctctgtctacagcaaggacaatccaaac
ctgctgttcagcatgagtggttttgaagttcgtatactgcccaagataagaatgactcaa
gaggctttcagtaatacaagagatggtgtttggaatctgcaaaatgagcaaacaaaagaa
agaactgcagttgctttcttaagggttgatgatgaacacatgaaggtgttcgagaaccga
gttagacagattctcatgtcttcaggttcaacaacattcacaaagattgtcaacaagtgg
aatactgccttaataggtctcatgacatattttcgtgaagctactgtgcacacgcaagag
ttgttggatcttcttgttaagtgcgaaaacaagatacagacgcgtattaagattgggctg
aattccaaaatgcctagcaggttccctcctgtcatcttttacactccaaaggaaattgga
ggacttggaatgctgtcaatgggtcacatcttgatccctcagagtgatctccggtatagc
aaacaaaccgatactggtgtcagtcattttaggagtggaatgagtcatgatgaggaccag
ttgattcccaatctgtatcggtacatacagccgtgggaaagcgagttcattgattcccaa
cgtgtttgggctgagtatgcattgaaaaggcaggaagctcaggcacagaataggcgatta
accctggaagatctggaagattcatgggatcgtgggatacctcgtatcaatactcttttc
cagaaggacaggcacacacttgcatatgacaaagggtggcgagttcggacagatttcaag
cagtaccaggtcctgaagcaaaatccattttggtggacgcaccaaaggcatgacgggaaa
ttatggaatttgaataactaccgtacagatgttatccaagctctgggaggagtagaagga
attcttgaacatacattgtttaagggaacctatttcccaacatgggagggtcttttttgg
gagaaggcttccggatttgaagagtctatgaagtataagaagttgactaatgcacaaaga
tccggtctaaaccaaattcctaacagaagatttactctgtggtggtcgccgactattaac
agagcaaatgtatatgttggtttccaagtccagctggatctcactgggatctttatgcat
gggaagataccaactctgaagatatccctgatccagatattccgtgcgcatctgtggcag
aagatacatgagagtgtagtgatggatctttgtcaagttttagatcaggagttggatgca
ctggaaattgagactgttcagaaagagacaattcaccctcgaaagagttacaaaatgaac
agctcatgcgctgatatcctgttgtttgctgcccatagatggcccatgtcaaaaccaagt
cttgtgcaagagtctaaggatgtttttgatcaaaaggccagcaataaatactggattgat
gtgcagcttcgctggggtgattatgattcccacgatattgagcggtacactagagcaaag
tttatggattacacaacagacaacatgtcaatctatccatcaccaactggtgttatgatt
ggacttgatctagcttataatctccactcggcttttggaaattggttccctggttcgaag
ccactgattgcccaggctatgaacaagatcatgaagtcgaaccctgcgttatacgttctg
agagaacgcattagaaaaggactgcagctgtactcttcagaacctacagagccctatctg
tcatcccagaactatggggagatcttcagcaatcagataatctggtttgtagatgacaca
aatgtgtatcgtgtcactattcacaagacatttgagggaaatctcacaacaaaacccatt
aatggtgcgattttcattttcaacccaaggactggccagctgtttctgaaggttattcac
acaagtgtgtgggctggacaaaagcgtctcggtcagcttgccaagtggaaaactgccgaa
gaagttgctgccctggtccgatcattgcctgttgaagagcagccgaaacaagttattgtg
acccgcaaaggaatgctggatccccttgaagtgcatttactcgatttcccaaatattgtg
attaaaggaagtgagttacaattgccattccaggcatgcttgaagatcgagaaatttggt
gatctgatactgaaggccactgaacctcagatggtattgttcaacatatatgatgattgg
ttgaagacggtctcctcctacacagctttctcgaggctgatattgattctacgagctctt
catgtaaacaatgagaaggcaaaaatgttgctcaagcctgataagacaattgtcacggag
cctcatcatatatggccgagtttaacaaatgaacagtgggtgaaggttgaaatagctctc
agagatctgatactttccgactatgcgacaaagaataatgtgaacacatctgcattgacc
aattccgagattcgtgatattattcttggagctgagatcactccaccttcacagcaacgt
caacaaattgctgagatcgagaaacaggcaaaggattctagtcagctcacagcagtcact
acaagaaccacaaatgtgcatggtgatgaattaatcgtgactactaccagtccttatgaa
caagcagcatttgggtctaaaactgactggcgtgtcagagctatttctgctaccaatctc
catcttcgtgtcaatcatatatatgttaactcagaggacattaaggaaactggatataca
tacattatgcccaagaatatattgaagaagttcatttgcattgcagatctgcgcacccag
gttgcaggttacctttatggtgttagtcctccagacaatccccaagtcaaggaaatccgt
tgtattgccatggcgccacagtggggtacccaccagcaagttcatctaccatcagctcta
cctgaacatgatttcttgaatgacttggagcctctgggatggatgcacactcagccaaac
gagcagcctcagctgtcaccacaggatcttgctgctcatgctcggatcttgtcaaacaac
aaacaatgggatggagagaaatgtataatattgacctgtagtttcacccctggttcatgc
tctctaaccgcatacaagttgaccccaactggatatgaatgggggaagagcaacacagat
gctgcaagcaacccccatgggtaccttccgacatactacgagaaggttcagatgctcctg
agtgaccgtttcctgggattctatatgatccccgataatggaccatggaactacaatttt
atgggtgtgaagcacacagtgagcatgaaatatggtgttaaacttggcacacccagggag
ttctatcacgaggatcaccggccaacacatttcctcgagttctccaacttggaggaaggt
gacattgctgaaggcgacagggaggacaccttcacttga
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integrated database retrieval system
