Salvia splendens (scarlet sage): 121748324
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Entry
121748324 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121748324
03041 Spliceosome [BR:
sspl03041
]
121748324
03036 Chromosome and associated proteins [BR:
sspl03036
]
121748324
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121748324
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121748324
mRNA cycle factors
Common to processing body (P body) and stress granule
121748324
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121748324
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121748324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121748324
NCBI-ProteinID:
XP_041998544
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All DBs
Position
9:373045..377327
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AA seq
621 aa
AA seq
DB search
MPATWSESAEKAPTGGGVGVTFHASRSTYVPPHLRNRPPSASTDPAPSAAVSYAGTLAGN
ESQGQGGAAVGGFQSYGPRNDRGGGGGLSRSGGGGGGSAWNNRNGGWDRGREREANPFQD
DGVPEPEFAVQENSGINFDAYEDIPVETSGKDVPPPVNTFAEIDLGDTLNMNIKRCKYVK
PTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMKSGQSAQRQPRMPRMAFPL
ALILSPTRELSMQIHEEAKKFSYQTGVKAVVAYGGAPINQQLRELERGVDILVATPGRLV
DLLERARVSLQNIRYLALDEADRMLDMGFEPQIRRIVQQMDMPPPGVRQTLLFSATFPKE
IQRLAADFLSNYIFLAVGRVGSSTELILQRIEYVLETDKRSHLMDLLHAQRANGVQAKQA
LTLVFVETKKGADSLEHWLCINGFPATSIHGDRTQQEREYALRSFKSGKTPILVATDVAA
RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNASLAKPLADLMQE
ANQEVPAWLARFAARSSFGGGRNRRGQGGGGRFGGRDFRKDSSYNRGGMDMYGGGSNMNN
GYNHSGGYGGGFGSAVTSAWD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctacatggtctgaatctgccgagaaggctcccaccggtggtggtgtaggggtt
acttttcatgcttctagaagtacttatgttcctccgcatcttagaaataggcctccttca
gcctcaacagatcctgctccctcagctgcagtttcctatgctgggactttggcgggaaat
gaatcccagggacaaggtggtgcagctgtaggtggatttcagtcgtatggtcctagaaat
gatagaggtggaggtggtggtctcagtcgcagtggtgggggtggaggtggtagtgcttgg
aacaatagaaatggtggttgggatcgtgggagggaaagagaggctaatccttttcaagat
gatggagttccagaaccagaatttgcagtacaggaaaattcagggatcaattttgatgct
tatgaggatattccggtggagactagtgggaaagatgtcccacctcctgtgaatacattt
gccgagattgatttgggtgatactttaaatatgaatattaagaggtgcaagtatgtgaaa
cctacacctgtgcagcggcacgccataccaatatcactcactggacgggatttgatggct
tgcgctcaaactggttcaggaaagactgcagcattctgtttcccaataattagtggaatc
atgaaaagtggccaatctgctcaaagacagccacgtatgccgcgtatggcgtttccgctt
gctctcattctttctccaacaagggagctttccatgcagattcatgaagaagctaagaaa
ttttcatatcaaactggcgttaaggctgttgttgcctatggtggtgcacctatcaatcaa
cagcttcgagaacttgaaagaggtgtggacatacttgttgcaacacctggacgtttagtt
gatttgttggaaagggctagagtttcgttacaaaacattaggtacttagcccttgacgaa
gcagatagaatgttggacatgggttttgaacctcaaataaggagaattgtgcaacaaatg
gacatgcctccacctggtgtaagacagacattgctatttagcgccacatttcctaaggag
atccagagactagctgcagattttctttcaaattacatatttctggctgttggaagagtt
ggttctagcactgaattgatcctccaaagaattgaatatgtgcttgagactgacaaaaga
agtcacctgatggaccttctccatgcacaaagagcaaatggcgttcaggccaagcaagca
ctgacattggtttttgttgagacaaagaagggagctgattcgcttgaacactggctttgc
attaatggctttcctgccacttccattcatggtgaccgaacacaacaggagcgagaatat
gctttaagatcattcaaaagtggcaaaactccaattctggttgcaactgatgtggcagca
cgtggccttgacatccctcatgttgcacatgtcgtcaacttcgatcttcctaatgacatt
gatgactatgtccaccgtattggacgcaccgggcgtgctggtaaaacaggactggccact
gcttttttcaacgatggcaatgcctcattggcaaaaccattggctgatttgatgcaagaa
gcaaatcaagaggttcctgcttggctggcacgctttgctgctcggtctagctttggaggt
ggtaggaaccgccgagggcaaggtggcggaggaagatttggcgggcgtgatttccgcaaa
gattcctcctacaatagaggtgggatggacatgtatggtggcggcagcaacatgaacaat
ggttacaaccattctggcggatatggtggaggctttggctctgctgtgacaagcgcctgg
gactaa
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