Salvia splendens (scarlet sage): 121748338
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Entry
121748338 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121748338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121748338
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121748338
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121748338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
AAA_30
nSTAND3
AAA_16
T2SSE
AGK_C
SRP54
TsaE
nSTAND_NTPase5
ABC_tran
AAA_7
DUF1299
Motif
Other DBs
NCBI-GeneID:
121748338
NCBI-ProteinID:
XP_041998563
LinkDB
All DBs
Position
9:8925798..8937416
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AA seq
1043 aa
AA seq
DB search
MSELKTWVSDKLMSLLGYSQPTVVQYVITLSKKASSPTEIVNQLVGLGIPSSAETVGFAK
EIFAKVEHKSSGPNQYQQKEREAAMLARKQKTYTLLEDDEDDDTVRVSPSPKNEESQKKK
FRKRSKPQDDIDDDDEVVNHGGKERQVKRRTAPDEDDGSESEEERLRDQREREELERHIR
ERDAAGTRKITDQKLSKKEEEEAIRRSDALENDGIQTLRKVSRQEYLKKREQKKLEELRD
DIEDEQYLFEGVKLTEVEYQELRYKKQIYELVKQRTEESDFANEYKMPDAYDEDGGVNQE
KRFAVALQRYRDPAAEEKMNPFAEQEAWEEHQIGKATLQFGSKNKKKKDDDYEFVFEDQI
EFIKATVMEGVNVEQDAVQSPEASAAKTALEKLQNDRKTLPIYPYREQLLQAVNDHQVIV
IVGETGSGKTTQIPQYLHEAGYSERGKIGCTQPRRVAAMSVAARVSQELGVKLGHEVGYS
IRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIT
RFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVDIHYTKAPEADYLDAAIVTAL
QIHVTQPPGDGDILVFFTGQEEIETAEETLKHRTRGLGTKIAELIICPIYANLPTELQAK
IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRTGMESLLVTPISKAS
ANQRAGRSGRTGPGQCFRLYTAYNFYHDLEDNTVPEIQRTNLANVVLMLKSLGINDLLNF
DFMDPPPSEALLKALELLYALSALNKHGELTKIGRRMSEFPLDPMLSKMIVASEKYTCSD
EIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVFSSWKETNFSTQW
CYENYIQVRSMKRARDIRDQLEGLLERVEIELSSNMNDFDAIKKAITSGFFPHSAKIQKN
GSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAPHFY
QMKDVEDATTKKMPRGEGRALKD
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttgaagacatgggtctcggacaaattgatgtcccttctgggatattcacag
cctactgttgtccaatatgtgataacattgtctaagaaagcttcatctcccactgagatt
gtaaatcaacttgtcggcttgggaatcccttcctctgctgaaactgtcgggtttgccaaa
gaaatttttgccaaggtggagcacaagagttcagggccaaatcaatatcaacagaaagaa
agggaggcagcaatgcttgcacggaaacaaaaaacctacacacttttggaggatgacgag
gatgatgacacagttcgtgtttctccatcacccaaaaacgaggaaagtcaaaaaaagaag
ttcaggaaaagaagcaaacctcaggatgacatagatgatgatgatgaggtagtaaaccat
gggggcaaagaaagacaagtgaagcgtcgaactgcccctgatgaagatgatggttccgag
tcagaagaagaaaggctgcgtgaccagagagaaagagaggagttggaacgtcatatcaga
gaacgagatgcggcgggtaccaggaagatcactgatcaaaagttatccaagaaggaagaa
gaagaggcaattcggagatctgacgctttggagaatgatggcattcagacattaaggaaa
gtgtcaaggcaagaatatttgaagaaaagggagcaaaagaaattagaagagctaagagac
gatatagaagatgaacaatacttatttgaaggtgtcaagctgactgaagtggagtaccag
gagctaagatacaagaaacaaatatatgagctcgtcaagcagaggacggaagagtctgat
tttgcaaatgagtataagatgcctgatgcgtatgatgaagatggtggtgtgaatcaggaa
aaaagatttgctgtggcattgcagcgttacagggatcctgctgcagaagagaagatgaat
ccatttgcggaacaagaagcgtgggaggagcatcagattggcaaagcaactcttcaattt
ggatccaagaataaaaagaaaaaggatgatgattatgagtttgtgtttgaagaccaaata
gagtttataaaggcaacagtcatggagggtgtcaatgttgagcaagacgcagtgcaatca
ccagaggcatctgctgccaaaacagccttggaaaaactccagaatgataggaagacactt
ccaatctatccttatagggaacagctgctccaagccgtgaatgatcaccaggttatcgtt
attgttggagagacaggttctggaaaaactacacagataccacaataccttcatgaagca
ggatactctgagcggggaaagattggatgtacccagccacggcgtgttgctgctatgagt
gttgctgcccgagtttctcaagaattgggagtaaaacttggacatgaggttggctattct
attcgatttgaagattgtacatcggaaaagacagtattaaaatacatgacagatggaatg
ctattgcgtgaattccttggtgaacctgaccttgcaagttacagtgtaattatggtggat
gaggctcatgaaagaactctctcaacggacgttttgtttggtttagttaaggatatcact
cgttttcgccctgacctcaaattgcttatatcgagtgccacacttgatgctgaaaagttc
agtgattattttgattctgctccaattttcaaaatacctggaagaagattccctgttgat
atacattatactaaggccccagaagctgactacttggatgctgccattgttactgctctt
caaattcatgtgacacaaccaccaggggatggcgatattctagttttctttacagggcag
gaggagattgaaactgctgaagagactcttaagcataggactagaggattggggacaaaa
attgcagaactaatcatttgtccaatttatgcaaatttgcctacagaactgcaggctaag
atattcgaacccacacctgaaggggcacgtaaggttgtcctggcaaccaatattgctgag
acatcgttgacgatagatgggatcaaatatgtcattgatccaggtttctctaagatgaag
tcttacaatcctcggactggtatggaatcgttgttggtgacccctatatccaaagcatca
gctaaccagcgagctggtcgatctgggagaacgggtccaggacaatgctttcggttgtat
accgcgtataacttttatcatgatctggaagataataccgttcctgaaatacaaaggact
aacttggccaatgtggtacttatgctcaagagccttggcatcaacgacctgctcaacttt
gacttcatggaccctcctccatctgaagctttgctgaaggccttggaactactctatgct
ctgagtgcacttaacaaacatggtgagctgacaaaaatcggcaggaggatgtctgagttt
ccacttgatcccatgctatcgaagatgattgttgcttccgagaaatatacttgttctgac
gagatcatatctattgctgctatgttatctgttggaaactcaatcttttaccgtcctaag
gacaaacaagttcatgcagacaatgcacgcttgaacttccacatgggaaatgtcggagac
cacattgcattgctgaaggtttttagctcatggaaggaaaccaatttctcgactcagtgg
tgctatgagaattatatccaggttaggagcatgaagagagctagagatatacgtgatcag
ctggaggggttgctggaaagggttgagatcgagttatcttcaaatatgaatgatttcgat
gcaataaagaaagctataacgtcagggttttttccacactcagcaaaaatacaaaagaat
ggatcttatagaactgtcaagcatccacagactgttcatattcacccaagctctggttta
gcacaggtgcttccaagatgggtcgtataccatgaattggttctaacaactaaggagtat
atgcggcaggtgaccgagctaaagccagaatggctagtggaaatagctcctcacttctat
caaatgaaagacgtggaggatgctacgacgaagaaaatgccacgtggtgagggtagggca
ttgaaagattga
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