Salvia splendens (scarlet sage): 121748910
Help
Entry
121748910 CDS
T07627
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121748910
03036 Chromosome and associated proteins [BR:
sspl03036
]
121748910
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121748910
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121748910
SLIK complex
121748910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
OAM_alpha
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
121748910
NCBI-ProteinID:
XP_041999408
LinkDB
All DBs
Position
9:complement(6138957..6153414)
Genome browser
AA seq
1684 aa
AA seq
DB search
MAFSRNSSDEAVDQIALNERSHLHQLDIDSSRLKDNAMTNNEEMTDLTPDKNGGEDTVSN
LRIGHDQPPLRGLAVGGKWGSSFWKDYPPARTSHGPSESGEESKSGSEYKGSEVEEESDG
LEDRMESEYDDITHKDLTGKGHQTVPVDEMLSDEYYEQDGDDPPNESVNHYRTTNHSLGY
SSKPTSRPAPGNISRKLKGSKANKYSDEDADYEEDDDDEDEDDLDDADFNPDYGARSREN
RIKDEDEGWDAEESDEDDNIDDEDDLDVSDEDELYFKKSRAKQPSKSGRNLKSTREFKSV
ASSTQRKKGRASFEDDDEESSADDSENISDEDFRSSRRGAQAHRKNGGRSVAVNDSSRRN
ELRTSGRSVRKISYVESDGSEDIDEIKKKNQKEEEEDADAIEKVLWHQRRGTAEEALRNN
KSTDPVLLSYLFDSELDWNDMEFLIKWKGQSHLHCQWKSFSELQNLSGFKKVLNYTKKVM
EDVKYRRMVSREEIEVNDVSKEMDLDIIKQNSQVERVIAERVVKDGSGEVVSEYLVKWQG
LSYAEATWEKDIDISFAQDAIDEYKSREAASMVQGKTVDFQRKKIKGSLRKLDEQPEWLK
GGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNSQQIQGPFLVVV
PLSTLSNWAKEFRKWLPEMNVIIYVGTRASREVCQQYEFYNDKRAGRSTNFDTLLTTYEV
LLKDKAVLSKIRWSYLMVDEAHRLKNSEASLYMALSEFSTKNKLLITGTPLQNSVEELWA
LLHFLDRDKFRSKDDFVRKYKNLSSFNETELTNLHMELRPHILRRVIKDVEKSLPPKIER
ILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGY
GGDTNSLGSTKLERVILSSGKLVILDKLLNRLHETNHRVLIFSQMVRMLDILAEYLSLKG
FQYQRLDGSTKAELRHQAMEHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNP
QNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEK
KETKKGTTFDKNELSAILRFGAEELFKEEKNDEESKKRLLGMDIDEILERAEKVENKATE
GEEGHELLSAFKVANFGSTEDDGTFWSRMIKPEAVAQAEDALAPRAARNIKSYAEAIPSE
KTNKRKKKGVETQERMSKRRRADSAYSPPVLEGATAQVRGWSYGNLPKRDATRFFRAVKK
FGNDSQISSIAAEVGGTVEAASTEAQIELYDALIDGCREAIKGENMDPKGPLLDFFGVPV
KADEILERVEELQSLAKRINRYEDPLSQFRALAYLKPSTWSKGCGWNQKDDARLLLGVYY
HGFGNWEKIRLDASLGLTKKIAPVELQHHETFLPRAPQLKERAAQLLEMEVAAVGGKNSN
VKVGRKNAKKQKDALTISGGKGRQGKPTSPRGNIQMNRRRAPKSQKMEPLVKEEGEMSDN
EEVYEQFKEVKWREWCEDVMVDEEKTLKRLQKLQSISADLPKDKVLSKIRNYLQLIGRRV
DQIVAEYEQELYRQERMTTRLWNYVSTFSNLSGERLQQIYTKLKQEQGVGPSAAGHRDLD
VEKFEAWKRKKRAEADPSHIQHPYQRPPPNNGTWLPDPSSSGILGPPPSESSRQLRNGRP
YRMQ
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttccagaaattcttcggatgaagcagtggaccagattgcattgaatgagaga
agtcatttgcaccagctggacattgatagcagtaggcttaaggacaatgctatgaccaat
aatgaagaaatgacagatcttacacctgataaaaatgggggtgaagatactgtaagtaat
ctaaggataggacatgaccagcctcctcttaggggattggctgtggggggcaagtggggt
tcatctttttggaaggactacccaccggcgaggacatcccatggaccatcagagtcaggg
gaggagtcaaagagtgggtcagagtataaaggctctgaagttgaggaggagtctgatgga
ttagaggatagaatggagtcagaatatgatgacattacacataaagatttgacggggaaa
gggcatcagactgttccggttgatgagatgttgtctgatgagtactatgagcaagatggt
gatgatccaccaaacgagtctgtgaaccattataggacaacgaaccactcacttgggtat
agttcgaagccaacatctcggcctgctcctggcaatatttcgaggaaattgaaggggtcg
aaagccaacaaatacagtgatgaagatgcagattatgaagaagatgacgatgacgaagat
gaagacgaccttgatgatgctgacttcaatcctgattatggagcaagaagcagggagaat
cggatcaaggatgaagatgaaggttgggatgctgaagaatctgatgaggatgataatatt
gatgatgaggatgatttggatgtctcggatgaagatgagctatactttaagaaaagtagg
gcaaaacaaccaagtaaaagtggtcgtaatttgaagtctacccgagaatttaagtcagtt
gcatcatccactcagagaaagaaaggtagagcttcttttgaggatgatgacgaagaatct
tctgctgatgactcagaaaatatcagtgatgaagattttagaagttcaaggagaggtgca
caagcacatagaaagaatggtggtcgatctgttgctgttaatgattctagtaggagaaat
gaactgcgaacatcaggtcgttcagttcgtaaaatatcatatgttgagagtgatggaagt
gaagatattgatgaaataaagaaaaagaatcaaaaggaggaagaagaagatgccgatgcg
attgagaaggtattatggcatcaacgaaggggcacagctgaagaagcattgaggaataat
aaatcaacagacccagttcttttgagctatttgtttgattctgaactggattggaatgat
atggaatttctgataaagtggaaaggccaatcacatttacattgtcaatggaaatcattt
tctgagttgcagaatctcagtggttttaagaaggttttgaattataccaaaaaagtaatg
gaagatgtgaagtaccggaggatggtatcccgggaggagattgaagtaaatgatgtcagc
aaggagatggacctggatatcatcaaacaaaacagtcaggtggagagagtaatagcggag
cgagttgttaaagatggttcaggtgaagtagtttcagaatatttggtcaagtggcaggga
ctgtcttatgctgaggctacatgggaaaaggacatagatatttcatttgctcaagatgct
atcgatgagtacaagtctcgagaggctgcatcaatggttcaagggaagactgttgatttt
cagcgcaagaaaatcaaaggaagtctcaggaagcttgatgagcagcctgagtggctgaaa
ggcggcaaacttcgagactatcagcttgaaggcctgaactttcttgtgaacagctggaga
aatgataccaatgtaattttagcagatgaaatgggtcttggtaaaactgttcagtcagtt
tcgatgcttggttttctgcagaattcgcagcaaattcaaggaccatttcttgtagttgtt
cctctatctaccttgtctaattgggcaaaagagtttagaaagtggttgcctgagatgaat
gttattatatatgttggaactcgtgctagccgtgaggtctgccagcaatatgagttttac
aatgacaaaagagcaggcaggagtactaattttgatactcttttgactacatacgaagta
ttattgaaggataaagccgttctctcaaaaattaggtggagctacctgatggttgatgaa
gcacataggttaaaaaacagcgaggcctctttgtatatggcgttatcagaatttagcaca
aagaacaagttgctaattaccggcactcccctgcaaaacagtgttgaagagctatgggca
ttgcttcattttctcgatcgtgataagtttaggagcaaagatgactttgttcgaaagtac
aagaatcttagttccttcaatgaaacagagcttacgaatcttcacatggaattgagaccg
cacattctccgaagagtgattaaagatgtggagaagtctttacctcccaagattgaacgc
atcctgagggttgagatgtctccacttcagaaacagtattataagtggattttggaacgt
aacttccaagatttgaataaaggagttcggggaaatcaggtctcgcttttgaatattgtg
gtggagttgaagaaatgctgtaaccacccatttttgtttgagagtgctgatcatggttat
ggcggggatacaaattccctaggtagcacaaaactcgaacgtgttattttgagtagcgga
aagctggttatactggataaactgcttaatagattgcatgagaccaaccatcgtgttctt
atattttctcagatggttaggatgttggatatacttgccgagtatctttctctcaaaggg
ttccaataccaaagacttgatggtagtacaaaggcagagttacgtcatcaggctatggaa
cattttaatgccccggggagtgaggacttctgttttcttctttcaactcgtgctggtggg
ttgggtatcaatcttgcaactgcagacacggttatcatatttgattccgattggaatccg
caaaatgacttacaggcgatgagccgagctcatcgaattgggcagcaagaagtagttaac
atttaccggtttgttactagcaagagtgtagaggaagatatattggagcgtgctaaaaag
aaaatggttctggaccatttggttattcaaaaactgaatgcagagggcaaactggagaaa
aaagaaacgaaaaaaggaacaacctttgataaaaatgagctttcagcaattctgaggttt
ggggctgaagaactctttaaggaagaaaagaatgatgaggaaagcaagaaaaggcttctt
ggtatggatattgatgagattcttgaaagggcagagaaggttgaaaacaaagcaaccgaa
ggagaggaaggtcatgaactgttgagtgcatttaaggttgcaaatttcggtagtactgaa
gatgatggaactttctggagccggatgataaagccagaagctgttgcgcaagctgaagat
gctttagctcctcgagcagcacgaaatattaaaagttatgcagaggctataccatctgaa
aagactaataagcggaaaaagaaaggagttgaaactcaggaaagaatgtcaaagagacga
agggcagattctgcttactctcctcctgtacttgaaggtgctactgcacaagtgagagga
tggtcatatgggaatttacctaaaagagatgcaactcgcttttttcgtgcggtcaagaag
tttggaaatgatagtcagataagctcgatagctgcagaagttggtggaacggttgaggct
gcttcaactgaagctcaaattgagctatatgatgctttaattgatggttgtagagaagca
attaaaggagagaatatggaccccaagggtccactcttagatttcttcggtgtacctgtg
aaggctgatgaaatcttagagcgtgttgaagaacttcagtctctcgccaagcggatcaac
cggtatgaagatcctctgtcgcaattcagagcactagcatatctcaaaccatccacatgg
tccaaaggttgtggctggaaccagaaggatgatgcaaggctgctgcttggagtttactat
catggttttggaaactgggaaaagataaggttggatgcaagccttggtcttacaaaaaag
attgctccagtggaacttcagcatcatgaaacgttcctaccccgagccccacaactgaaa
gagcgagctgcacaacttttagaaatggaagtcgcagctgttggtggaaagaactctaat
gtgaaagttggccgtaagaatgcaaaaaagcagaaagacgctcttactatatcaggcgga
aagggaagacaagggaagcctacttctcctagagggaatattcaaatgaatagaagaaga
gctcccaaatcccagaagatggagccattagttaaagaggaaggtgaaatgtctgataat
gaggaagtttatgagcagttcaaggaagtaaagtggagggagtggtgtgaagatgtcatg
gtagatgaggaaaagactcttaaacgtctccaaaaactgcagtctattagtgcagatttg
cctaaagataaggtgctttccaaaatccggaactatttgcagcttatcggtaggagggtc
gaccaaattgttgcagagtatgagcaggagttgtataggcaagaaagaatgaccactaga
ttgtggaattatgtatctacgttttcaaacttgtccggtgagagacttcagcaaatttat
actaaacttaaacaggagcaaggtgtaggaccgtcggctgctgggcacagggatcttgat
gtggagaaattcgaagcttggaaacgaaaaaaaagagctgaagccgatccttctcatatt
cagcatccataccaaagacctcctccaaataatgggacctggttacccgatcccagctct
tctgggattctagggccgcccccatctgagagcagcagacagttacgtaatgggaggcct
taccggatgcagtaa
DBGET
integrated database retrieval system
