Salvia splendens (scarlet sage): 121749017
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Entry
121749017 CDS
T07627
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121749017
03083 Polycomb repressive complex
121749017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121749017
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121749017
Histone modification proteins
HAT complexes
HATB complex
121749017
HDAC complexes
Sin3A-HDAC complex
121749017
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121749017
PRC2.2
121749017
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121749017
Heterochromatin formation proteins
Other heterochromatin formation proteins
121749017
Chromatin remodeling factors
NuRD complex
121749017
NuRF complex
121749017
NuRF complex (fruit fly)
121749017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
EIF3I
WD_LRWD1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML
MIOS_WD40
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
Beta-prop_DCAF4
DUF6922
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
121749017
NCBI-ProteinID:
XP_041999559
LinkDB
All DBs
Position
9:complement(16459692..16462726)
Genome browser
AA seq
392 aa
AA seq
DB search
MAEEAMVEEEFSVWKKNTPLLYDLVVCHSLEWPSLTVQWLPTPPSSDSGDLAAHKLILGT
HTSDDCPNFLMLADAFLPRDPTSAIDVDPENSIVPRVDIVQKIRVDGEVNRSRCMLQNPA
LIAAKTNIPEIFVFDTAKQLEDANVDCCNPDLRLRGHDKEGYGLSWSSFREGYLLSGSND
CKICLWDVSATPQKKVLDAKFIYEGHENVVEDVSWHLKNENLFGSVGDDGKLVIWDLRTN
KFQHSVVVHEKEVNYLSFNPFNEWVLATASSDSTVGLFDMRNLNAPLHALSSHEKEVFQV
EWDPNHETILASAADDRRLMVWDLNRIGDEQLEGEAEDGPPELLFSHGGHKAKISDFSWN
KNQPWVISSVAEDNTLQVWQMAESIYRDDDFP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaggcgatggtggaggaggagttttcggtgtggaagaagaacacgccgttg
ctgtatgacctcgttgtatgccactccctcgaatggccgtcactcaccgtccagtggctg
ccgacgccgccttcatctgactccggcgatctcgccgcgcacaaattgatcctcgggacg
catacatccgatgattgccccaatttcctcatgctcgccgacgccttcctcccacgcgac
cccacctccgccatcgatgtcgaccccgagaactcaatcgtccctagggtggatatagtt
caaaaaattcgagttgatggagaagtgaataggtcacggtgtatgttacagaacccagct
ttaatcgctgcaaagaccaatattcctgaaatattcgtgtttgacactgctaagcagctg
gaggatgccaatgtcgattgttgcaatccggacttgagacttcggggacatgataaagaa
ggatatggtttgtcgtggagctccttcagagaaggatatctattgagtggttcgaatgat
tgcaaaatttgtctgtgggatgtctctgcaacgcctcaaaagaaagtgcttgatgcaaag
tttatttatgagggccatgagaatgtggttgaggatgtatcgtggcatttaaagaatgag
aacttgttcggctctgtgggggatgacggcaaactagtgatttgggacttgcgcacaaac
aagttccagcactctgttgttgtacatgagaaagaggtgaattatttatctttcaatcca
tttaatgagtgggttttggcaactgcgtcctctgattctacagttggtctatttgatatg
cggaacttgaatgctcctctgcatgctctaagcagtcatgagaaagaggtattccaggtt
gaatgggatcctaaccacgaaacgattcttgcatctgctgctgatgacagaaggttgatg
gtttgggaccttaacaggattggagacgagcaactagaaggagaagctgaagatggtcct
cctgagctcctcttctcccatggtggtcataaagcaaagatttcagacttttcatggaat
aagaatcaaccatgggtcatctcgagcgtagcagaggacaacacactgcaggtctggcaa
atggcagaaagcatctaccgtgacgatgattttccgtag
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