Salvia splendens (scarlet sage): 121749025
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Entry
121749025 CDS
T07627
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121749025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121749025
Enzymes [BR:
sspl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121749025
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121749025
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121749025
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
121749025
NCBI-ProteinID:
XP_041999568
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Position
9:17421332..17426356
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AA seq
599 aa
AA seq
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MVTVLRVHLPSDIPIVGCELTPYVLLKRTDKSHISDDITEFNPIDGHFLRYKWYRILSDK
KVAVCNVHPTEQATLQCLGCLKAKLPVAKSYHCSPKCFADAWQHHRLLHERAATALNENA
TEEEEVFGRFNSSGSNASLSTSQSNPNLSNANSSLYPTAITQRNGGETWVEVGYTKIYTP
TADDVGHVLKFECTVVDVETKLTVGSPSTFSTSRVIPAPSPIPRRVIPVGMDVSRNIDFD
GRISSAMTFSVLSYNILSDAYATSDAYSYCPTWALSWPYRRQNLLREIVGYRADIVCLQE
VQSDHFEEFFAPELDKHGYQAVFKMKTTEVFVGAMKNIDGCATFFRRDRFTNVKKYEVEF
NKAAQSLIEAFIPSVQKKNALNRLIMDNVALILVLEAKCSNQGADNAGKRQLICVANTHV
NVQQELKDVKLWQVHTLIKGLEKIAVSADIPMLMCGDFNSVPGSAPHALLAMGKVDQNHP
DLAIDPLGILRPLSKLTHQLPLVSAYSSFARVVAGLGLEQRKKTDPATNEPLFTNCTRDF
IGTHDYIFYTADSLTVESLLELLDENSLRKDTALPSPEWSSDHIALFAEFRCKPRSRRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggtaactgtgcttcgggtgcacttgccgtccgatatacccattgttggatgcgaattg
actccatacgtgcttttgaagcgtactgataagtctcacatttctgatgatattactgag
ttcaaccccatcgacggccatttcttgagatataaatggtatcgcatactaagtgacaaa
aaagttgcagtctgtaatgttcacccaaccgagcaggctacattacaatgccttggatgt
ctcaaggcgaaattacctgttgccaagagttaccattgttcgccaaagtgctttgcagat
gcctggcaacatcatcgtctcctgcacgaacgtgctgctactgctttaaatgagaatgca
accgaggaggaggaagtttttggtcgcttcaatagtagtggtagtaatgctagcttgtca
acatctcaatcaaatcctaatttgtcgaatgcaaacagtagtttgtaccctactgccatt
actcaaagaaatggtggtgaaacgtgggttgaagttggatacacaaagatatacacacca
acagctgatgatgttggtcatgtccttaaatttgagtgtactgtagtagatgttgaaact
aaattaactgtgggatctcctagtactttttcaacttcacgtgtgattccagctccgtca
cccattccgcgacgggtgattcctgttggaatggatgtttcaaggaatatagattttgat
gggcgtatttcatctgcaatgacattttctgtgctttcatacaatatcctatccgatgca
tatgcgactagtgatgcatacagctattgtcccacttgggctctatcttggccttaccgc
aggcaaaatttgttaagagagatagttggctaccgtgcagacattgtttgtctccaagag
gttcaaagcgaccactttgaggaattcttcgcaccggagctggacaaacatggttatcaa
gctgtattcaaaatgaaaacaacagaggtttttgttggggccatgaaaaacattgatgga
tgtgctacttttttccgtcgtgatagattcactaatgtcaagaaatatgaggttgagttc
aacaaagctgcacagtctttaattgaagcattcataccaagtgttcagaagaaaaatgct
ttaaaccggttgatcatggataatgttgcgctcatcttggttctagaagccaagtgcagt
aaccagggtgctgataatgccgggaaacgccagcttatttgtgtggcaaacacacatgta
aacgtgcagcaagagttgaaagatgtcaagctttggcaggttcatacactaataaaagga
ctagaaaaaatagctgtgagtgcagatattccaatgctgatgtgtggtgatttcaattct
gttccgggaagtgcccctcatgccctccttgctatggggaaagttgatcaaaatcatccg
gacctagccatagaccccctcggaattcttcgtcctcttagcaaattgacgcatcagctc
ccattggtaagtgcttactcgtcctttgcaagagttgtggccggactgggtctggagcag
cgaaagaaaacggatcctgctactaatgaaccccttttcacaaactgcactagagatttt
atcggtacccatgattacatattctatacagctgactcgttaacggtggagtctttgttg
gagctcttggatgagaatagcttgcggaaagatactgctcttccttctccagaatggtct
tcagaccacatagcactgtttgctgaattccgctgcaagccgaggtccagacgctcataa
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