KEGG   Salvia splendens (scarlet sage): 121749395
Entry
121749395         CDS       T07627                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7-like
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03020  RNA polymerase
sspl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121749395
  09124 Replication and repair
   03420 Nucleotide excision repair
    121749395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sspl03021]
    121749395
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121749395
   03400 DNA repair and recombination proteins [BR:sspl03400]
    121749395
Transcription machinery [BR:sspl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121749395
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121749395
DNA repair and recombination proteins [BR:sspl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121749395
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Vg_Tdu
Other DBs
NCBI-GeneID: 121749395
NCBI-ProteinID: XP_041999902
LinkDB
Position
9:complement(685236..688456)
AA seq 177 aa
MFFHMVLERNMQLHPRHFGRDLRDKLVAKLMKDVEGTCSGHHGFIVAITGIESVGKGRIR
DGTGFVVFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
PGDIPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGANS
NT seq 534 nt   +upstreamnt  +downstreamnt
atgtttttccacatggtattggagagaaacatgcaactacaccctcgtcactttggccgt
gatctacgggataagcttgtagccaagctcatgaaagatgttgaaggcacttgcagtggc
caccacgggtttattgttgcaataactgggattgaaagtgttgggaaaggtcggattcgt
gatggaaccggatttgttgtttttccagttaagtaccagtgtgttgtttttcgacctttt
aagggagagattctggaagctgttgtcacaatggttaacaagatgggatttttcgctgag
gctggtcctgtccaaatcttcgtgtccaatcatttgatacctgatgatatggaattccaa
cctggtgacatccctaattacactacttctgatggatcagtcaaaatacaaaaagaaagt
gaagtcaggctgaagataattggaactcgggttgatgctactgaaattttctgcatcggc
accatcaaagacgactttctgggtgtgatcagtgacccgggtgcaaactcatga

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