Salvia splendens (scarlet sage): 121749576
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Entry
121749576 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121749576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121749576
03012 Translation factors [BR:
sspl03012
]
121749576
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121749576
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121749576
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121749576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
dsrm
DEAD
AAA_22
T2SSE
nSTAND3
AAA_16
AAA_19
ATPase
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
121749576
NCBI-ProteinID:
XP_042000081
LinkDB
All DBs
Position
9:complement(18940742..18950620)
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AA seq
1181 aa
AA seq
DB search
MFAQNLFKPKLRAMSLAHLTCPTKSWSSAVTAYRRLHNLYPRTQTRNLLAGFSFCCYASS
SSSSKSSVVVRRSRNAASTFSSPHFYQLNLSYGRFAYDEYASEESDCEVQSSPTQLGAST
LDNVEDWQWKLTTILRRKDEQEIVSREKKDRRDFEQLSALATRMGLHCRQYDRVVVFSKV
PLPNYRSDLDTKRPQREVLLPFGLQKEVNSHLRAHLAKKAVNKESLHNACQGQLIDEGLE
EQEVSSTKSVIAERVLQRRSLQIFNKQQDWQESSDGQKMLEFRKSLPSHEARETLLRTIS
QNQVVVVSGETGCGKTTQLPQYVLESEIDASRGAACSIICTQPRRISAIAVAERVAAERG
EEIGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVFIDEIHERGMNED
FLLIVLKDLLPRRPELKLILMSATLNAELFASYFGGAPAIHVPGFTYPVRNYFLENILET
TGYRLTPYNQIDNYGQDKLWKMQKQGLRKRKTQIASSVEEALMAADFREYSPRVRESLSC
WNPDSIGFNLIENVLCHICRKERPGAVLVFMTGWDDINSLKQQLEAHPLLGDPSKVLLLA
CHGSMSSAEQKLIFNTPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVHDAFADYQLPELLRTPLQSLCLQI
KSLQLGSISEFLAKALQAPEPLSVQNAVEYLKMIGALDEKENLTVLGRHLSMLPVEPKLG
KMLIYGAIFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSARGFSDHLALVRAF
DGWKHAEREQFGYEYCWRNFLSMQTLRAIDSLKKQFSYLLKDIGLVENFESCNMCSHDEH
LARSVICAGLFPGICSVVNKERSISLKTMEDGSALLHSNSVNAQEAKIPFPWLVFNEKIK
VNSVFLRDSTGVSDSVVLLFGGNVSSGGLDGHMKMLGGYMEFFMKPELATMYLSIKKELG
ELVQKKLSNPKLDIKSHNELLTAVRLLVSEDRCEGRFVFGRQLPTASKKFEKEIQLGSAN
VGGSNAKSHLQTLLARAGHQPPSYKTKELKNNKFRSTVMFNGLDFVGQPRGSKKEAEKDA
AAEALTWLTGDSQSSQKTVEYMSAILKKSKKNQDYSSTRWR
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcccaaaatctcttcaagcccaagctcagagccatgtctctggctcatcttaca
tgtcccacaaaatcctggtcctccgccgtcacggcgtaccgcaggcttcacaatttgtac
ccgagaactcaaactaggaatcttctggcaggcttctccttttgctgctatgcttcatca
tcatcttcatccaagtcttctgttgtggtgaggcgcagcagaaacgctgcttctacgttt
tcttctccgcacttttatcagctcaatttgagctacgggagatttgcttacgacgagtat
gcgtcggaggagtccgactgcgaagtccagtcttcgcccacgcaattgggtgcttccact
cttgataatgtcgaagattggcaatggaagttgactacgattttgcgccgtaaagatgag
caagagattgtttcgcgagagaaaaaagaccggcgtgattttgagcagctctcagctctt
gcaaccagaatggggttgcattgtcgtcagtatgacagagtagttgtattcagtaaagtc
ccgctgccaaattatagatctgatttggatacaaagcgtcctcaaagggaggtgctgtta
ccatttgggttgcaaaaggaagtaaattctcatctcagggcacaccttgctaaaaaggct
gtaaacaaagaaagccttcacaatgcttgtcagggtcagttaattgatgaaggactggag
gagcaggaggtgtcctcgaccaaaagtgttatagccgagagggttcttcagcgaaggagc
ttgcagatattcaataaacaacaagattggcaagaatcttcagatggtcaaaagatgctg
gagttccggaaaagtcttccatctcatgaagccagagaaacattattgcgcactatttct
caaaatcaggttgttgttgtctctggtgaaactggctgtgggaaaactacccaattacca
caatacgtcttggagtcagaaattgatgcctctcgaggagctgcatgtagtattatctgc
acccaacctagacgaatttccgctatagctgttgctgagagagttgctgctgagcgtggt
gaagaaataggagaatctgttggttataaagttcgccttgagggaatgaaaggaagagat
actcgtctccttttctgtactactggcatccttttaaggagattattggtggacagaaac
ttgaaaggtgtaactcatgttttcattgatgaaattcatgagcgtgggatgaatgaagat
tttcttctaattgtactgaaggatcttcttccccgccgaccagaactaaaattgattttg
atgagtgctaccctaaatgctgaactttttgcttcttattttggtggagctccagcaata
catgttccgggatttacataccctgttcggaattactttttggaaaacattctagaaacg
actgggtacagattgacaccgtataatcaaattgataactatggtcaagacaaattgtgg
aaaatgcagaagcagggtctcaggaaaaggaagacgcagatagcttcatctgttgaggaa
gctcttatggctgctgattttagggagtacagccccagagttcgggagtcactctcttgt
tggaatcctgattcaattggatttaatctaattgagaatgtgctttgtcacatttgccgc
aaagaaaggcctggtgctgtattagtatttatgactggttgggatgacataaattctttg
aaacagcagcttgaagctcatccactattgggagatccaagcaaagttttgttgcttgca
tgccatggttccatgtctagtgcagaacagaaattaatttttaatacacctgaagatgga
gtcaggaagattgttctggcaaccaatatggctgaaacaagtatcacaattaatgatgtc
gtttttgtggttgattgtgggaaagcaaaagagacatcttatgatgctctgaataacact
ccttgtttgcttccatcctggatctcgaaggcttctgctcgccagaggaaaggtagagca
ggccgtgtacaaccaggagagtgttaccatctatatcctagatgtgtgcatgatgccttt
gcagactatcaattgccagaacttttgaggacacctttacagtctttatgtttgcaaatc
aagagcttgcaacttggaagcatatcagagttcttagccaaggccttacaagcacctgaa
ccgctctcagttcaaaatgctgttgagtacttaaagatgattggggctttagatgaaaaa
gaaaatctgacagttcttggacgccacttgtcgatgcttccagtcgagccaaagctcggt
aaaatgctcatatatggtgctattttcaattgcttggatccaatcatgacaattgtagct
ggcctaagcgtgagagatccattcttgatgccattcgacaaaaaagatcttgctgagtct
gcaaaggcccagttttctgctcgtggcttcagtgaccatcttgcactggtccgggccttt
gacggttggaaacatgctgaaagggagcagtttggctatgaatattgttggagaaatttt
ctatctatgcaaactctgagagccattgattctctaaagaagcagttctcgtatctgctc
aaagatattggactagttgaaaattttgagagttgtaacatgtgcagtcacgatgaacat
cttgctcgttctgttatatgtgcgggtctgtttcctggtatatgctccgttgtgaacaag
gagaggtcaatatcattaaaaacaatggaggatggttcagcactgttgcattcgaattcc
gtgaatgcccaggaagccaaaattccattcccatggcttgttttcaatgaaaaaatcaaa
gtcaattcagtattccttcgagattcaactggtgtatctgattcagtggttctcttattt
ggagggaatgtttctagcggcggactagatggtcacatgaaaatgctgggtggatacatg
gagttcttcatgaagccagagttggctactatgtatcttagcataaagaaagagcttggc
gaacttgttcaaaagaagctctcgaacccaaagttggacataaagagtcataacgagctt
ctaacagcagtgagattgctggtgtcagaggaccgatgtgaaggcagatttgtttttggg
cggcagcttccaacagcctcgaaaaaattcgaaaaggagattcaattaggttcagccaac
gttgggggtagtaatgcaaaatctcacctccaaaccttgctcgctagggcaggacatcag
ccgccttcctataagacgaaagaattaaaaaacaacaagttcagatctactgttatgttc
aatggtctagattttgttggccagcctcgtggtagtaaaaaagaggcagagaaagacgca
gctgcagaggctctgacgtggttgactggtgatagccaatcgtctcaaaaaactgtagag
tacatgtccgccattctgaagaaaagcaagaaaaaccaagattattcctctacaaggtgg
cggtag
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integrated database retrieval system
