Salvia splendens (scarlet sage): 121749590
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Entry
121749590 CDS
T07627
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121749590
03015 mRNA surveillance pathway
121749590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121749590
03041 Spliceosome [BR:
sspl03041
]
121749590
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121749590
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
121749590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
121749590
NCBI-ProteinID:
XP_042000094
LinkDB
All DBs
Position
9:5668318..5677464
Genome browser
AA seq
905 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFPHELENLVDMTKVKIDVMKPWIAKRVTELI
GFEDEVLINFIYGLLEGEAVNGKQIQISLTGFMERNTAKFMKELWLLLLSAQQNVSGVPQ
QFLDAKEEEAKIKKAETDRIANEIQRKKEKEKQEFYEDKAKMDGDGAKSRDNHSELEPNV
KHYPRGSTVQQANEKERYNRNGRRRSSRGSRSPDSPNHSLSSSEQRRSRSISGGPPSRSR
SISSERRDRSPPRRSITPHRRHVVRRSCSPRRRPYLNRRSRSNSRRRSPSPVRYRVRSPR
RHRSRSPLRRRSRSPVRRRSRSPVRRRSRSPIRRRSRSPVRRRTRSPVQRKSRTPIRRSP
VQYKSRTSLRRRSLSPVHSMSPSPIRGRSPVHRRSPSPVRRRSRSPLRRHSPSPRHQSPS
PARRQYRRSLSTSSHQSMSPVRQRPSIHGRKRSCSPGIQRSPAPQESSSPSNIRRISLSP
VRRGSTKHTRSPIHSPGEKARRRKNYSPARRASPSERAEVQSGNRKGTKSAEQRSVVSLR
SPQRDMLDQRDLNGKPRNSSPSLEKSPSGSDASRGRSGSEERRSISPCGSPLQRRGRMIP
PESPNPSRKASDPKIRRDDSRTSVDDENNLPSREIGRYKNRSSGKSSLMPVRDKGSLEAG
DTHGLADSTQSKEQQLTNRLHDRPRDTADHKEHRERRELLTLTKTTDMSMKSREYHDYPQ
SKDMKIPRIEDDESGFRVPEKEDTPKLLRKSEQNDRNGSSDSALNEETGDHVSKVKEKRK
QRKSGRQDAESDEFSSYDSHEDKKEIKKRKREEKKLKKEMRRRRREEEKRRRRGERLSEK
QKLKQGDASGSSSDLAGDNSEDESVKRQKLRASNPKDTESEQKRLEIELREKALKSLRAR
KGSGN
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggatttttcaggggcacctccgccgatcaggatacgcgattctcgaacaag
caagcgaagcttctcaagtctcagaaattccctcatgaactggaaaatctggtggatatg
accaaagtgaagattgatgttatgaagccctggattgcaaaacgtgtgactgagctaatt
ggatttgaagatgaagtgcttatcaatttcatttatggacttttggagggagaggcagtt
aatgggaagcagattcagatttcccttactggatttatggagagaaatactgcaaagttt
atgaaggagctctggttattgcttctcagtgcgcagcaaaatgtaagcggtgtccctcaa
caatttctggatgcaaaagaagaggaagctaaaataaagaaggcagagacagatcggata
gccaatgaaattcaaagaaagaaagagaaagagaagcaagaattttatgaggataaagca
aagatggacggtgatggagcaaagtcaagagacaatcatagtgagttggagcctaatgtg
aagcattatcccaggggttctactgtccaacaggcaaatgagaaagaacgttacaataga
aatggccggagaagaagcagcaggggttcacgttctccggattcacctaaccactcgcta
tcttccagtgagcagcggaggtcaagaagcatttctgggggaccaccatcaagaagtcgt
tccatttcctccgaaagacgagatcgctctccacctagacggtctattacacctcaccgg
cgtcatgttgttcggcgatcttgctctccaaggcgtaggccatatttgaatcgaagatcg
aggtctaactcacggcgcagatctccttcccccgtgcgatatagagttcgttctccaagg
cgtcatagatcgcgatctcccttgcgccgtaggtcacggtcccctgtacggcgtaggtca
cggtcccccgtacggcgtaggtcacggtcccctatacggcgtaggtcacggtcccctgta
aggcgtaggacacgatcccctgtgcaacgtaagtcgaggacgcccatacggagatcacca
gttcagtacaagtcaagaacgtctttacgacgcagatccctttctcctgtgcatagcatg
tcaccttcccctatcagaggaagatctccagtgcatcgccggtcaccatctcctgtgcgc
cgccgttcacgatctccattgcggcggcactcaccatctccacgtcatcagtctccttct
cctgcaagaaggcagtaccgccggtctctgtcaacttcatcacatcaatctatgtctcct
gttcgacaaaggccctctatacatggtagaaaaagatcatgttctccagggattcaaaga
tctcctgcccctcaagaatcaagttccccctcaaatattcgtcgaatttccctttcacca
gttaggagaggatcaacgaagcatacaagatcacctatccattctcctggagaaaaagct
agaagacgaaagaactattcccctgctcgtcgtgcttctcccagcgaaagagccgaagtt
cagtcagggaatcgtaaaggaacaaaatctgcagaacagcggtctgttgtatctctgagg
tcaccacagagggatatgctggatcaaagagatttgaatggaaaacctcgaaactcgtca
ccgtccttggaaaagtccccatccggatcagatgcttccaggggcagaagtggcagtgaa
gaaagaaggtctattagtccttgtggtagccctctccaaaggaggggaagaatgataccg
cctgagagtccaaatccttcgcgaaaagcctctgatcctaaaattcgtcgtgatgattct
aggacaagtgtggatgatgaaaacaatttgcctagcagggagattggacggtacaaaaat
aggtcttcagggaaaagttctttgatgccagtgcgtgataagggctcactggaagctggt
gatactcatggtctagctgatagcacacagtcaaaagagcagcaactgacgaacaggttg
catgacaggccacgtgacactgctgatcataaagaacaccgcgaacggagagagttgttg
acacttacaaaaacgactgatatgagtatgaaaagtagggaatatcatgactatcctcaa
tccaaggatatgaaaattcctcgcatagaagatgatgagagtggttttcgggtcccagaa
aaggaagatacacctaaattgttgaggaagtctgagcagaatgatcgtaatggttcatcg
gattctgccctaaatgaggagactggtgatcatgtgagtaaagtcaaagaaaagaggaag
cagaggaaatcgggtagacaagatgctgaatcagatgagttttctagctatgattcccat
gaagacaagaaggagatcaaaaagaggaaaagagaagaaaaaaaattgaaaaaggagatg
cgccggcgacggcgggaggaggagaaacgccgtcgaaggggtgagaggctctcagagaag
caaaagctgaagcaaggtgatgctagtggttcatcatcagatcttgcaggtgataattct
gaagatgaaagtgttaaaaggcagaagttgcgagcaagcaaccctaaggacacggaatct
gagcagaaaaggctagagatagagctgcgtgagaaggctcttaaatcacttcgagccaga
aagggctccggaaactaa
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