Salvia splendens (scarlet sage): 121749746
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Entry
121749746 CDS
T07627
Name
(RefSeq) endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121749746
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121749746
microRNA pathway
RISC loading complex
121749746
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Helicase_C
DND1_DSRM
DEAD
PAZ
ResIII
Dicer_PBD
Cas3-like_C_2
SWI2_SNF2
SNF2-rel_dom
Piwi
Motif
Other DBs
NCBI-GeneID:
121749746
NCBI-ProteinID:
XP_042000303
LinkDB
All DBs
Position
9:complement(3473208..3483830)
Genome browser
AA seq
1926 aa
AA seq
DB search
MGEEAGSPANARNLVADGRPSYWLDACEDVSCDDYFVDFGPGTTNSVPGPEPHSGGCTDP
GFFGGIDQILDSIKNGGTDMVNHTPTNGISNGTHISPAPQVCVQDQRSLSKNAVNNGNGQ
SLVVSSNSSKNDKTDLGKRSHEVNGSEQRRDKKVRGRDPMERKVWDRAPRRKRQRGWDDM
ESDGQLRDQARRKERHGAGNWKDRDHREARGYWEREKVTNELVFRTGSWEACKNRDEKAN
AQKNNKYSGCSDETKPEQPTEKPPEEQARQYQLDVLDQAKKRNTIAFLETGAGKTLIAVL
LMKSISAELQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGFQVGHYCGEMGQDFWDARRW
LREFESKQVLVMTAQILLNILRHSIVKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTQ
KEKRPSVFGMTASPVNLKGVSSQVDCAVKIRNLESKLDSVVCTIKDREELAKHVPMPSEV
VVEYDKAASLWSLHEQIKQMEQTVEEAARSSSRRSKWQFMGARDAGAKEELRQVYGVSER
TESDGAANLIQKLRAINYALGELGQWCAYKVAQGFLTALQNDERANYQLDVKFQELYLDK
VVSLLQCHLSEGAILESDTREAEINKGPADENGPEELEEGELTNNSVVSGGEHVDVIIGA
AVADGKVTPKVQSLIKILLKYQHTDDFRAIIFVERVVTALVLPKVFAELPSLSFVKSASL
IGHNNSQEMRTSQMQDTIARFRDGRITVLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYI
QSRGRARKPGSDYILMVERGNLSHMAFLKNARNSEETLRREAIERTDISHLKDNGSINSA
EDIAGAVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMERHEKPGSPTEYS
CKLQLPCNAPFEKLEGPPCKSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGMKGEADKV
EQNDDGDPLPGTARHREFYPEGVADILRGEWVLSGRSCDDSKLFHLYMYSVKCENVGFSK
DPLLTLVSDFAILFGNELDSEVLSMSMDLFIARSLVTKASLDYKGLIDIRETQLELLKSF
HVRLMSIVLDVDVDPSNTPWDTAKAYLFVPLTGSRSEDAVNEIDWDLIQTVTKTEAWNNP
LQRARPDVYLGTNERTLGGDRREYGFGKLRNSMAFEQKCHPTYGIRGAVAQFDVVKASGL
APKRNDTDLPHQVDLGEGKLMMADSYIKAEDLVGKIVTAAHSGKRFYVDSVRYDMTAENS
FPRKEGYLGPLEYSSYADYYKQKYGVDLTYKQQPLVRARGVSYCKNLLSPRFEHSEGPEG
QSEDIHEKIYYVFLPSELCFVHPLPGPLVRGAQRLPSIMRRIESMLLAVQLKDIINYPVP
AIKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN
IVLYQYALVKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKEDSSSFFDEEVNSDGSFRRK
HDDEYEDEMEDGELESDSSSYRVLSGKTLADVVEALIGVYYVEGGKHAANHLMRWTGIDI
DFDLKEINYSVMPSSVPENILRTVDFDALGNALSMQFSDKGLLVEALTHASRPSSGVSCY
QRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHLHLRHG
SSALEKQIRDFVKEVQVELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDAGCNTALV
WKVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVYVDGVQVGV
AHNPQKKMAQKLAARNALEALKEKEMADAIKSAEDDDGKERKNGSQTFTRQTLNDICLRR
NWPMPLYKCINEGGPAHAKRFTFSVRVNTSDKGWTDECIGDPMPSVKKAKDSAAVLLLEL
LNKWYA
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggctgggagtccggctaatgctcgtaatctcgttgccgatggcagacct
tcgtactggttagatgcatgtgaggatgtttcgtgtgacgattactttgttgattttgga
cctggtacaaccaattcagttcctggccctgaaccacactctggaggctgcacggatcct
ggtttttttgggggaattgatcagattcttgacagcataaagaatggtggcacggacatg
gttaatcatactcccacgaatggtattagcaatggaactcatatttcccctgccccgcaa
gtgtgtgtgcaggatcaacgatcactgtctaagaatgctgttaataatggtaatggacaa
agtctggtggtcagtagcaacagctcaaagaatgacaaaactgaccttggtaaaaggtct
catgaagttaatggttctgagcaaaggcgtgacaaaaaggttcgtggaagggatccaatg
gagaggaaagtttgggatagggctcccagaaggaagagacaacgtggttgggatgatatg
gagagtgatgggcagctgagagaccaagccaggagaaaagaacgccatggtgcaggtaac
tggaaggacagagaccacagggaagcaaggggttactgggagagggaaaaagtaactaat
gaactggttttccgaactggttcttgggaagcatgtaaaaatagagatgagaaagcaaat
gctcagaaaaacaacaaatattcggggtgttcagatgagacgaaaccagagcagccgacc
gagaaacctcctgaggagcaagctcgccaataccagttggatgtcctagaccaggcaaag
aagagaaatacaattgccttccttgaaacaggtgcaggaaaaacactgattgctgttctc
cttatgaaaagcatcagtgctgaattgcaaaaacaaaataagaaaatgctagctgttttt
ttggtgcctaaagtacctcttgtttatcagcaagctgaggtaatccgtgagcgtacaggt
tttcaagtcggccattactgtggtgaaatgggtcaagatttctgggatgcaagaagatgg
ctgcgtgaatttgaaagcaaacaggtcttagtgatgacggctcaaattcttctaaatatt
ctaagacatagtatagtgaaaatggaagccatcaatctccttattttggacgagtgtcat
catgctgtgaagaaacatccttactctttggtgatgtcagagttctatcatacaacacaa
aaggagaagaggccatcagtttttgggatgactgcatctcctgtaaacttgaagggtgtt
tctagtcaagttgattgtgcagtaaagattcggaatctagaaagtaagctagattctgtg
gtttgtactattaaggaccgtgaggagttggcaaaacatgtgccaatgccttcagaagtg
gtagtggagtatgataaagctgccagtttgtggtcactccatgagcaaataaaacaaatg
gaacagactgtcgaagaagctgctcgttcaagctccagaagaagtaaatggcagtttatg
ggagccagggatgctggagctaaggaagaactgcgccaagtttatggtgtctctgaaagg
actgaaagtgatggtgctgctaatttaatacagaagttgagggccatcaactatgcactt
ggtgaacttggacagtggtgtgcttataaggttgcgcaaggatttttaactgctttgcag
aatgatgagagggcgaattatcagcttgatgtcaagttccaggaattgtatctagacaaa
gttgtttctcttctacaatgtcatttgtctgaaggagctattttggagagtgatactaga
gaggctgaaataaataaaggccctgcagatgagaatggacctgaagaactagaggaagga
gaacttaccaacaatagtgttgtatctggcggagagcatgttgatgtgattattggagct
gctgttgctgatggaaaagtgactccaaaagtgcagtcattgatcaaaatacttctcaag
tatcagcatacagatgattttcgtgctataatctttgtcgaacgtgttgtgactgccttg
gttcttcctaaggttttcgcagagctcccatcattgagttttgtcaaatctgcaagtttg
attggccacaacaacagtcaagaaatgcgaaccagccagatgcaagatactattgcccga
ttcagagatggacggataactgttttagttgccactagtgttgctgaggagggacttgat
attcggcagtgcaatgttgtcattcgctttgatcttgccaaaactgtattggcatatatt
cagtctagaggccgtgccagaaaacctggttctgactacatcttgatggttgagagggga
aatctgtcccatatggccttcctaaagaatgctaggaatagcgaggagaccttgcgcaga
gaagccatagagaggactgatatcagtcatcttaaggataatggcagtataaattctgct
gaagatatagctggtgcagtgtaccaagtggagtccactggtgctgttgtgagtttaaat
tctgcagtagggctgatccatttctactgctctcagttgcccagtgacagatattcaatt
ctccatccagagttcattatggagcgccatgaaaaacctggaagccctactgagtactct
tgcaagctccagcttccctgtaatgcaccatttgagaaactggagggacctccatgcaaa
tcaatgcgtcttgcacaacaggctgtttgtttggctgcttgcaagaaactccatgagatg
ggagcattcactgatatgctattgccagacaagggaatgaagggagaagctgataaagtt
gaacaaaatgatgacggggatcctcttcctggaactgctaggcatagagaattttaccct
gaaggagtagctgacattctcaggggagaatgggtattgtcagggaggagctgtgatgac
tcaaagttgtttcatctttacatgtattctgtcaaatgtgaaaatgttggcttctccaaa
gatccactcttaactctggtttccgactttgcaatattgtttggcaatgaattggattca
gaggtactatcaatgtcgatggatttattcatagctcggtcattagtaacaaaggcatca
cttgattataaagggcttatagatatcagagaaactcagctggaattgctcaagagcttt
catgtacgattgatgagcattgtattggatgtggatgttgatccctcaaataccccgtgg
gacacagcaaaggcatatttatttgttcccttgactggaagtagatctgaagatgctgtg
aatgagattgactgggatctaattcagactgttacaaagactgaagcctggaacaatccc
cttcagagagctaggccagatgtttacctaggcaccaatgaacgaactctaggtggggat
aggagggaatatgggtttggaaaattaagaaacagcatggcatttgagcagaaatgtcac
cctacttatggtattagaggagctgttgcccagtttgacgtggtaaaagcatctgggtta
gcacctaaaagaaatgatactgatttgccacaccaagttgatttaggagaaggcaagttg
atgatggcagattcctatataaaagcagaagatctggttggaaaaattgtgactgctgct
cactctggaaagaggttctatgtggattctgtacgctatgatatgactgcagagaactca
tttccaaggaaagaaggctaccttggtcctctggagtacagttcttatgctgattattat
aagcaaaagtatggagtagatttaacatacaagcagcaacctctagtaagagcccgtggt
gtttcctattgcaagaatcttttatctccacgatttgaacactcagagggtcctgagggt
caatctgaagatatccatgagaagatatattatgtttttctcccttccgagctttgtttt
gtgcatccacttcctggaccgctagttaggggtgctcaaagattgccatcaattatgaga
aggattgaaagtatgctgcttgcagtacagcttaaggatattattaattatcctgttccc
gctataaagatcctggaggctttgaccgcagcatcatgtcaagagactttctgctatgaa
cgagcagagctattgggagatgcttatttaaaatgggtagttagtagatttcttttttta
aaatatcctcagaaacacgaaggtcagcttactagaatgaggcaacaaatggttagcaac
attgtactttatcagtatgcactggtgaaagggcttcagtcatacattcaggcagatcgc
tttgctccatctagatgggctgcgcctggagtgctccctgtttttgatgaagacaccaag
gaagactcatcgtcattttttgatgaagaagttaattctgatggtagtttcaggagaaag
catgatgatgaatacgaagatgaaatggaagatggggaacttgagagtgactctagctca
tatcgtgtgctgtccggaaaaacactggcagatgttgtggaagcgcttattggtgtatat
tacgtcgaaggtggaaagcatgccgccaaccaccttatgagatggacgggaattgatata
gattttgatttgaaagagataaattactcagttatgccgagttctgttcctgaaaatata
ctgagaactgttgattttgatgcacttggaaatgccttgagtatgcaattcagtgataag
ggcttgttggtagaagctttaacccatgcatcgcgtccatcttcgggagtatcttgttat
caacgattagaatttgttggtgatgcagtgctggatcaccttatcacaaggcatctattc
ttcacatacacagatttacctcctggacgcctcacagatttgcgagctgctgctgtgaat
aatgagaatttcgctcgtgtggctgttaaacataatcttcacttacatcttcgtcatgga
tcaagtgcacttgaaaaacagattcgagattttgtgaaagaggtccaggttgaactttca
aaacccgggtttaactcttttggcttaggggactgcaaagctcctaaagttctcggtgac
atcgtagaatcgattgctggggctatctttcttgatgctggatgtaacactgcactcgtc
tggaaggtttttcaacccttgttggacccaatggttaccccagaaacgctccccatgcac
cctgtccgagaattacaagaaagatgccaacaacaagctgaaggtctggaatataaagcc
acccgaagtgggaacctggctactgtggaagtatacgttgatggtgttcaggtcggggtt
gctcacaacccccaaaagaaaatggcacaaaaattagctgctcgaaatgctctcgaggca
ctaaaggagaaggagatggccgatgccataaagagcgcagaggatgatgatggtaaagag
aggaaaaatgggagccaaacttttacaagacagaccctgaacgatatatgtttacgcaga
aattggccgatgcccctatacaagtgtataaatgagggtggtccggcacatgcaaaaaga
tttacattttctgtacgcgttaatacgtctgataaaggatggactgatgaatgcattggt
gatccgatgccaagtgtcaagaaggcgaaggactcagctgcagttcttcttttggaactt
ctgaacaaatggtacgcataa
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integrated database retrieval system
