Salvia splendens (scarlet sage): 121749992
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Entry
121749992 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121749992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121749992
03036 Chromosome and associated proteins [BR:
sspl03036
]
121749992
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121749992
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121749992
mRNA degradation factors
5'-3' decay
Decapping complex
121749992
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121749992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
NA-iREase2
AAA_30
Motif
Other DBs
NCBI-GeneID:
121749992
NCBI-ProteinID:
XP_042000453
LinkDB
All DBs
Position
1:38728022..38734328
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AA seq
491 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGGGGMNPNAGPNPSFQPRNPMHQYVQRSPAPSNQNQQMYQQQQ
WLRRNQLPPSDSAVDEVEKTVQSEAIDSSSQDWKARLKLPPRDNRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDKNAIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLANKNVCVLNECSMLVMDEADKLLSPEFQPSIEQLIRFMPTSRQILMFSATF
PVTVKDFKERYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPQIDQAVYCQ
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcgagcgagatacccaccgccaggaatgggcggcggcagaggcggagggggc
ggaatgaacccgaatgccggaccaaaccctagttttcagccacgaaaccctatgcaccag
tatgtgcaaagaagtccagcgcctagtaatcagaatcagcaaatgtatcagcagcagcaa
tggctgcgaagaaatcagttgcctccttccgattccgctgtcgacgaggttgaaaagacc
gtgcagtcagaagccattgattctagttcacaagattggaaggcacgtttaaagttacca
ccacgggacaatcgttacagaacagaggatgttacagctaccaaaggaaatgaatttgaa
gattactttttaaagcgggaactgttaatgggaatatatgagaagggttttgagagccca
tctccgatccaggaagagagtattccaattgctctcactggaagtgatattttggctagg
gcaaaaaatggaaccggaaaaactgcagcgttttgcattcctgccttggagaagattgat
caagataaaaatgcaattcaagttgttattcttgtcccaacaagagaattggctcttcaa
acatcacaagtttgtaaagaactggggaagcacttacaaattcaagtcatggctactact
ggcggaactagcttaaaagatgacataatgcgcctttaccagccagtgcatttacttgtt
gggacgccaggaagaattcttgatcttgctaacaagaatgtctgtgttctgaatgagtgt
agcatgcttgtaatggatgaggctgataagcttctgtccccagagttccagccttctatt
gagcagttgattcgctttatgcccacaagccgtcagattcttatgttctcagctacattt
cctgttacagtaaaagatttcaaagaacgataccttagaaaaccctatattatcaacctt
atggatgagcttacgctcaagggtataacccagttttatgcttttgttgaagaaagacag
aaagttcactgcctgaacacccttttctcaaagcttcaaataaaccagtctattattttc
tgcaattctgtgaatcgggtggaacttcttgccaagaaaatcacagaacttggctactct
tgcttctacattcatgctaagatgcttcaggatcaccgcaacagagtatttcatgacttc
cgtaatggtgcctgcaggaatcttgtctgcactgacttgtttacaagagggatagatatc
caggcagtcaatgttgtaatcaacttcgattttcctaagaactctgaaacatatttacac
agggttggccgatccggaagatatggacaccttggcttagctgtgaatctcatcacctat
gaggaccgtttcaatttgtataggattgaacaagaattaggaacagaaatcaagcagatc
ccaccacaaattgaccaggccgtatactgtcagtga
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