Salvia splendens (scarlet sage): 121750966
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Entry
121750966 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121750966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121750966
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121750966
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_8
TPR_12
Motif
Other DBs
NCBI-GeneID:
121750966
NCBI-ProteinID:
XP_042001599
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Position
10:17725182..17731848
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AA seq
846 aa
AA seq
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MDSVPSPLPLAVRDGSPEAAAMAELAKEAALLFQAGNFVNCLRVLNQLLQKKADDPKVLH
NIAIAESFQDGFSDLKKLIEALQQIQKQMERLAHTSGEHLELSSNDGRAPKAGQNGTNHA
SLQFSSPPVVYNDEFDASVAMFNIAVVWYHLHEYAKSFLYLDALYQNIAPIDEATALRIC
FLFLDVALLSQHALRSADVISYMEKVFCVNSLTNQPENGISVQQQSMLASKSPSLPSNST
TPDSSNPDSVVNANMLENSLSMNLSEEALEDESLQLLSSLEISGQSLQRLSGVTSSNDHS
RSQGEESLSVVDLRLKVHLYKVRLFLLTRNLKAAKREVKMAMNLARGKDYPMALYLKSQL
EYARKNPRKAIKLLMASSNQSEIGMSSMYYNNLGCIYYQLGKHQTSGVFFSKALKNSPFV
PKEKPTKLLNLSQDKSHLILYNCGMLSLACGRPFHAARCFQKASIIFHNRPLLWLRISEC
CLMALEKGLIKSDSSADRSDIKVNVIGKGKWKHVALRYGVPSNGQCDVGMVDSWSGDRKQ
PDLSLSLACQCLVNALYLLDSSEGKYSRSSSAPSTEQNDPREAFSFDMNHRNVGGGDQKE
SDVPSGLSQVNSNGEVKEQKGNNQSLSIYNSIVDYESICMKENQMLKQAIFADLAYVELS
LGNPLKALATAKSLLKIPECSRMYIFLGTMYAAEALCLLNRPEEAAALLTPYISGGNNIE
LPYSREDCENWTADKLIDSDDSNGGAITSNGVSNPDEPQLLFSSPEEARGTFAANFAANV
ALLGDFDLAHHFVLKALSDIPNSPQAILTAIYLDLKRGKTQDALAKLKHHVAVRFLPSNI
PLNGSS
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtgccttcgccattgccacttgccgtgagagatggatcgccggaagcggcg
gcgatggcggagttagctaaggaggctgctttactctttcaggctggaaactttgtgaat
tgtttgagagtattgaatcaattgttgcagaagaaagcggacgatcccaaggttcttcat
aatatagctattgccgaaagctttcaagatggattttcagatcttaaaaagcttattgaa
gcgcttcaacaaatccagaaacaaatggaacggcttgctcatacatctggggaacactta
gagctttctagtaatgatggaagagcacctaaagctggccagaatggcacgaatcatgct
tcacttcaattttctagtccaccagttgtctacaatgatgagtttgacgcatcagtggcc
atgttcaatatagctgttgtttggtatcatcttcatgaatatgcaaaatcatttttgtat
ttggatgcattatatcagaatattgcaccgattgatgaggcaacggcccttcgtatatgc
tttttgtttttggatgttgcgttgctttctcagcatgcgttgagatctgctgatgtgatt
agctacatggagaaagttttttgtgtgaatagcttgaccaatcaaccagagaacggaatc
tcagtgcagcagcaatctatgttagcatcgaagtctccttcacttccttctaattcaacc
acccctgattcttctaacccagattcagttgttaatgcaaatatgctggaaaattcttta
tctatgaatttatctgaagaagcacttgaagatgagtcattgcagttactctcttccctg
gaaataagtggacaaagccttcaaagactttctggtgttacgtcttctaacgatcattca
agaagccaaggggaggagtccctttctgttgttgatttaaggctaaaggtacatctttac
aaggttcgactttttcttctcacaaggaacctcaaagcagctaagcgtgaagttaagatg
gccatgaacttagcccgcggaaaagattatcccatggctctttatttgaagtcacagctt
gaatatgcccgcaaaaatcctcgcaaggcaatcaagcttttgatggcatcgagtaaccag
tcagagatagggatgtcaagcatgtattacaacaatcttgggtgcatctattaccaattg
gggaagcatcagacatcaggtgtattcttctccaaagccctgaagaatagcccattcgta
ccgaaggaaaaacctacaaaacttttaaatttgtcacaggataaatcccatctgatattg
tacaactgtggtatgctttccttggcttgtggtagacctttccatgctgctcgctgtttt
caaaaggctagcattatctttcacaatagacctcttctgtggctgcgaatttctgagtgc
tgtctgatggccctagagaaaggactgataaagtctgattcctctgcagacagatctgat
atcaaagttaatgttattggaaagggtaagtggaaacatgttgctttgaggtatggggtt
ccgtcaaacggccagtgcgatgttggaatggttgattcgtggtcaggagaccgtaaacaa
cctgatctttctctctctcttgcctgtcagtgtcttgtgaatgctctgtatttgttggac
tcttctgaaggaaaatattctagatctagctcggctcctagtactgaacagaatgatccc
agagaagcattttcttttgatatgaatcacaggaatgtcggtggtggcgatcaaaaggaa
tctgatgtaccatctggtttgagtcaagttaattcaaatggtgaagttaaagaacaaaag
ggaaacaatcagagtttatcaatttacaattctattgttgactatgagagtatctgtatg
aaagaaaaccagatgctgaagcaagcaatatttgctgatttggcctatgtggagctgtca
ctaggaaatcccctgaaagccctagctacagcaaagtctcttttgaaaattcccgagtgt
tcaagaatgtacatctttttggggacaatgtatgcagctgaagctctgtgccttctcaat
cggccagaggaagctgccgctcttctgacaccttatatttctggtgggaacaacattgag
cttccatatagccgagaggactgtgaaaattggacagcagataaattaattgatagtgat
gattcaaatggaggtgcgattacttctaatggtgtctcaaaccctgatgaaccccagtta
cttttttccagccctgaagaagcacgtggaacttttgctgcgaatttcgctgcaaatgtt
gcattgctgggagattttgatctggcacaccactttgtactgaaggcattatctgatata
cctaacagtccacaggctattctaaccgcgatttatttggatctaaaacgcggcaagaca
caggatgctcttgccaagttgaaacatcatgttgctgttaggtttctccccagcaacatt
ccgttaaatggctcttcttga
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