Salvia splendens (scarlet sage): 121751771
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Entry
121751771 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121751771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121751771
03012 Translation factors [BR:
sspl03012
]
121751771
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121751771
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121751771
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121751771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Dicer_dimer
AAA_11
Rad17
Motif
Other DBs
NCBI-GeneID:
121751771
NCBI-ProteinID:
XP_042002496
LinkDB
All DBs
Position
10:complement(9179912..9188843)
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AA seq
1212 aa
AA seq
DB search
MSLLPLRFPPLHLHSKTLKPHTADPPPARLLFRMKDQPPSSYGGIYVPPHHRFPSSNTAA
TASAPNDSKPMNVTTQCDAEKRESFSSVRVTSNGNSEAAKSYPYLPPHHYQKQVQQQKEN
SGREEVAQQVSDRQVVFSAQAGALSSENANAWEWKLNALLHDKDKQELVSREKKDRRDFD
QIAAVASRMGLYSHLYTKVVVVSKFPLPHYRFDLDDKRPQREVIMAPGLQKRVDAYLVNY
ISGKRKSMDAMSRSSSSNGSIATDDSLFEQPEPLPHSKTAMEKIFWRRSMEMYEKQRNWQ
ESPEGRNMMVLRRSLPAYKEKDAMLSAISLNQVVLISGETGCGKTTQIPQLILESEINSL
RGGMCNIICTQPRKISAMSVSERIATERGEKLGETIGYKVRLEGMKGRDTHLLFCTTGIL
LRRLSLDRSLKTVTHIIVDEIHERGINEDFLLIVLKDLLPRRPDLKLVLMSATIDEKLFS
SYFSGAPRLHIPGFTYPVQTYFLESILEITGYKLTPHNQIDEYGMDRAWKMSKQVPRKRK
SQIASAVEDTLSVAEFKDYSAQTRESLSCWNPDCLGFNLIEYLLCKICGNERPGSVLVFM
TGWDDITALKDKLQAHPVVGDANRVLLLACHGSMGSAEQKLIFDRPPDGIRKVVLATNIA
ETSITIDDVVFVIDCGKAKEASYDALNNTSCLLPSWISKVSAKQRRGRAGRVQPGECYHL
YPKCVFDGFAEYQLPEILRTPLQSLCLQIKSLKLGGISEFLSRALQSPEYLAVQKAIEYL
KIIGALDESENLTVLGRYLTMLPMEPKLGKMLILGVIFNCLDPILSVVAGLSVRDPFLAP
LDKKDLAEEAKAQFSHDFSDHLALVRAYEGWKVADKDLNAYEYCWKNFLSAQSMKAIDSL
RKEFYSLLMDAGLVDSNPITYNVWSYDENLLRAVICYGLYPGICSVVHNERSFSLKTMED
GNVLLYSNSVNARNSRIPYPWFVFNEKIKVNSVFLRDSTAVSDSMILLFGGNILRGDTDG
HLKMLGGYLEFFMDPTLAKMYLSLKLELDELIQTKLLNPTMDVHSYHELISAIRLLISED
RCGGRFVFSHQLLLPSNPPLAAMTEAQKSASIHNTESGPGGDNSKSQLQTLLTRAGYAAP
SYKTKQQKNSQFQSTVAFNGMEIMGKPCNNKKLAEKDAAAEALQYLLGGNGSCRDRLDLV
SIMLKRSKKDHK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccttcctctccgctttccccctctccatttacactccaaaaccctaaaacct
cacaccgccgaccctccgccggcgcgattactcttcagaatgaaggaccaaccgccgtct
tcttacggcgggatctacgtgcctccgcatcaccgcttcccatcttcgaacaccgccgca
accgcatccgccccgaatgattcgaagcctatgaatgtgactactcaatgtgatgctgag
aaacgagagtcgtttagtagtgtaagagttactagtaatggaaacagtgaagccgcaaaa
tcttatccttacttgccacctcatcactatcagaagcaagttcagcaacagaaggaaaat
tcaggccgcgaagaggtggctcagcaagtttctgatcgccaagtcgtgttttcagcacaa
gctggtgctttatcctcagagaatgctaatgcatgggaatggaagttaaatgccctgtta
catgataaggataagcaagagttagtgtcaagagagaaaaaagatagaagagattttgat
caaatagcagctgtagctagtaggatgggcttatatagccacctctacacgaaggtagtt
gttgtcagtaaattcccattgccgcactatcgatttgatcttgatgacaaacgtccccag
agggaggtaatcatggctcctggtctgcaaaagcgcgtggatgcttatcttgtcaattac
atttctggaaagcgtaagagcatggatgctatgtcaagatcaagtagtagtaatggtagc
attgctaccgatgacagcctttttgagcaaccggagccacttccacatagcaagactgcc
atggagaaaattttctggagaagaagtatggagatgtatgagaaacaacgcaactggcag
gaatctcctgaaggaagaaatatgatggtgctccgtagaagtctccctgcttacaaggag
aaagatgctatgttaagtgccatttcactgaatcaggttgtcctcatatctggtgaaact
ggttgtggtaagaccacccaaattccccaattgattttggaatccgagataaactctctc
cgtgggggcatgtgcaatattatatgtacccaacctcgaaagatatctgccatgtctgta
tctgagaggattgcaacagagagaggggagaaattgggggaaacaattggatataaagtt
cggctagagggtatgaaaggaagggatacccacctcctcttttgcacaactggcatcttg
ttgcgcagattatcacttgatagaagcttaaagactgtaacacatattattgttgatgaa
attcacgaacgtgggattaatgaagattttctgcttattgttttgaaagatcttcttcct
cgtcgaccggacctaaagcttgtcttgatgagtgcaaccatagatgaaaaactcttctca
tcatactttagtggggctccaaggctccatattcctggatttacttatccagttcagacc
tatttcctagaaagtattctggagataacgggatacaagttgacgcctcataatcaaata
gatgaatatggtatggacagggcttggaaaatgagcaaacaagtacctagaaagagaaag
agccaaattgcttcggcagttgaggatacacttagtgttgctgaattcaaggactatagt
gctcagacaagggagtctctgtcttgctggaatccagattgtctaggtttcaaccttata
gaatatcttctgtgcaagatatgtggaaacgaaagaccaggttctgttttagtgtttatg
actgggtgggatgacataacagctctgaaggacaagcttcaagctcatcctgttgtagga
gatgcaaatcgggttttgttactggcgtgccatggttctatgggcagtgcagaacagaaa
ttgatatttgacagacccccagatggaataagaaaggttgttctagccacaaatattgct
gagactagtatcactattgatgatgtagtttttgttattgactgcgggaaggcaaaagag
gcatcatatgatgcgctaaacaacacttcttgtttgcttccttcctggatctcaaaggtt
tcagccaagcagagaagaggaagagctggtcgtgttcagccaggagaatgctaccatctc
tatccaaaatgtgtatttgatggttttgctgaatatcaattaccagagattctgagaact
ccactgcaatccctttgtttacaaatcaagagtctaaagcttgggggtatctctgagttc
ttatctagggcattgcagtcacctgaatatcttgcggttcaaaaggctatagaataccta
aagattattggggctttagatgagagtgagaatttaactgttttgggtcgctacttgaca
atgcttcccatggagcccaaacttgggaaaatgcttatattaggtgtcatttttaattgc
ttggatcccatattaagtgttgttgctggtctaagtgtccgtgatcctttcttagctcca
ttggataagaaagatctggcagaggaggcaaaagctcagttttcacatgacttcagcgac
catcttgctcttgtccgagcatatgagggttggaaagttgctgataaagatctcaatgca
tatgaatattgttggaaaaactttctgtctgcacaatcaatgaaagctattgattccctt
cgtaaggagttctactctttgctgatggacgcaggacttgtggatagcaacccaattact
tataatgtctggagctatgatgagaatctactccgtgcagttatttgttatggcttgtat
ccagggatttgttctgttgtgcacaatgaaagatccttctctctcaaaacaatggaagat
gggaatgtgcttttgtactctaactctgtgaacgcacgtaactcaagaataccataccca
tggtttgttttcaatgaaaagatcaaggtgaactctgtgtttctgcgtgattcaacagct
gtatctgattccatgattctgttatttggtggaaacatcttaagaggtgacacggatggc
cacttaaaaatgttgggtggatacttggaattctttatggatcctactctggcaaaaatg
tacctgagtttgaagctggagcttgacgaattaattcagacgaaacttctaaaccccaca
atggacgtacactcgtatcacgaactcatctctgcaattcgtctgctgatctcggaagat
cgctgtggtggcagatttgtgtttagccatcagttgctgctgccttcgaatccacccctt
gcagcaatgacagaagcacaaaaatcagcttcaatacacaatacagaaagtggtcctggt
ggcgataactctaagagccagctacagacgttgctgacacgtgcaggctatgccgcaccc
agctacaaaactaagcaacaaaagaacagccaatttcagtcgacagttgcatttaacggc
atggagataatggggaagccttgcaacaacaagaagctagctgagaaagacgcagcagct
gaggctctgcagtatctgcttggagggaacggatcatgtcgtgaccgtctcgaccttgtg
tcgataatgttgaaaagaagcaagaaagatcacaagtag
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