Salvia splendens (scarlet sage): 121751812
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Entry
121751812 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121751812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121751812
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121751812
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121751812
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
SRP54
AAA_30
AAA_16
nSTAND3
AGK_C
T2SSE
Nab2
nSTAND_NTPase5
TsaE
Sigma54_activat
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
121751812
NCBI-ProteinID:
XP_042002539
LinkDB
All DBs
Position
10:7930732..7942058
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AA seq
1050 aa
AA seq
DB search
MSELKTWVSDKLMSLLGYSQPTVVQYVITLSKKASSPTEIVNQLVGLGIPSSAETVGFAK
EIFARVEHKSSGPNQYQQKEREAAMLARKQKTYTLLEDDDDDDDTVRVSPPPKNEESRKK
KFRKRSKPQDDIDDDDDDDEVVNHGGKERQVKRRTAPDEDDGSESEEERLRDQREREELE
RHIRERDAAGTRKITDQKLSKKEEEEAIRRSDALENDGIQTLRKVSRQEYLKKREQKKLE
ELRDDIEDEQYLFEGVKLTEVEYQELRYKKQIYELVKQRTEESDFANEYKMPDAYDEDGG
VNQEKRFAVALQRYRDPAAEEKMNPFAEQEAWEEHQIGKATLQFGSKNKKKKDEDYEFVF
EDQIEFIKATVMEGVNVEQDSVQSPEASAAKTALEKLQNDRKTLPIYPYREQLLQAVNDH
QVIVIVGETGSGKTTQIPQYLHEAGYSERGKVLGIGCTQPRRVAAMSVAARVSQELGVKL
GHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLF
GLVKDITRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVDIHYTKAPEADYLD
AAIVTALQIHVTQPPGDGDILVFFTGQEEIETAEETLKHRTRGLGTKIAELIICPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRTGMESLLV
TPISKASANQRAGRSGRTGPGQCFRLYTAYNFYHDLEDNTVPEIQRTNLANVVLMLKSLG
INDLLNFDFMDPPPSEALLKALELLYALSALNKHGELTKIGRRMSEFPLDPMLSKMIVAS
EKYTCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVFSSWKE
TNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELSSNMNDFDAIKKAITSGFFPH
SAKIQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLV
EIAPHFYQMKDVEDAGAKKMPRGEGRALKD
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttgaagacatgggtctcggacaaattgatgtcccttctgggatattcacag
cccactgttgtccaatatgtgataacattgtctaagaaagcttcatctcccactgagatt
gtaaatcaactggtcggcttgggaatcccttcctctgctgaaactgtcgggtttgccaaa
gaaatttttgccagggtggagcacaagagttcagggccaaatcaatatcaacagaaagaa
agggaggcagcaatgcttgcacggaaacaaaaaacctacacacttttggaggatgacgat
gatgatgatgacacagttcgtgtgtctccaccacccaaaaatgaggaaagtcgaaaaaag
aagttcaggaaaagaagcaaacctcaggatgacatagatgatgatgatgatgatgatgag
gtagtaaaccatgggggcaaagaaagacaagtgaagcgtcgaacagctcctgatgaagat
gatggttccgagtcagaagaagaaaggctgcgggaccagagagaaagagaggagttggaa
cgtcatattagagaacgagatgcggcgggtaccaggaagatcactgatcaaaagttatcc
aagaaggaagaagaagaggcaattcggagatctgacgctttggagaatgatggcattcag
acattaaggaaagtgtcaaggcaggaatatttgaagaaaagggagcaaaagaaattagaa
gagctaagagacgatatagaagatgaacaatacttatttgaaggtgtcaagctgactgaa
gtggagtaccaggagctaagatacaagaaacaaatatatgagctcgtcaagcagaggacg
gaagagtctgattttgcaaatgagtataagatgcctgatgcatatgatgaagatggtggt
gtgaatcaggaaaaaagatttgctgtggcattgcagcgttacagggatcctgctgcagaa
gagaagatgaatccatttgcggaacaagaagcgtgggaggagcatcagattggaaaagca
actcttcaatttggatccaagaataaaaagaaaaaggatgaggattatgagtttgtgttt
gaagaccaaatagagtttataaaggcaacagtcatggagggtgtcaatgttgagcaagac
tcagtgcaatcaccagaggcatctgctgccaaaacagccttggaaaaactccagaatgat
aggaagacacttccaatctatccttatagggaacagctgctccaagccgtgaatgatcac
caggttatcgttattgttggagagacaggttctggaaaaactacacagatacctcagtac
cttcatgaagcaggatactctgaacggggaaaggtactagggattggatgtacccagccg
cggcgtgttgctgctatgagtgttgctgcccgagtttctcaagaattgggagtaaaactt
ggacatgaggttggctattctattcgatttgaagattgtacgtcggaaaagacagtatta
aaatacatgacagatggaatgctattgcgtgaattccttggagaacctgaccttgcaagt
tacagtgtaattatggtggatgaggctcatgaaagaactctctcaacggacgttttgttt
ggtttagttaaggatatcactcgttttcgccctgacctcaaattgcttatatcgagtgcc
acacttgatgctgaaaagttcagtgattattttgattctgctccaatttttaaaataccc
ggaagaagattccctgttgatatacattatactaaggccccagaagctgactacttggat
gctgccattgttactgctcttcaaattcatgtgacacaaccaccaggggatggcgatatt
ctagttttctttacagggcaggaggagattgaaactgctgaagagactcttaagcatagg
actagaggattggggacaaaaattgcagaactaatcatttgtccaatttatgcaaatttg
cctacagaactgcaggctaagatattcgaacccacacctgaaggggcacgtaaggttgtc
ctggcaaccaatattgctgagacatcattgacaatagatgggatcaaatatgttattgat
ccaggtttctctaagatgaagtcttacaatcctcggactggtatggaatcgttgttggtg
acacctatatccaaagcatcagctaaccagcgagctggtcgatctgggagaacaggtcca
ggacaatgctttcggttgtataccgcgtataacttttatcatgatctggaagataatact
gttcctgaaatacaaaggactaacttggccaatgtggtacttatgctcaagagccttggc
atcaacgacctgctcaactttgacttcatggaccctcccccatctgaagctttgctgaag
gccttggaactactctatgctctgagtgcacttaacaaacatggtgagctgacaaaaatc
ggcaggaggatgtctgagttcccacttgatcccatgctatcgaagatgattgttgcttcc
gagaaatatacttgctctgacgagatcatatctattgctgctatgttatctgttggaaac
tcaatcttttaccgtcctaaggacaaacaagttcatgcagacaatgcacgcttgaacttc
cacatgggaaatgtcggagaccatattgcattgctgaaggtttttagctcatggaaggaa
accaatttctcgactcagtggtgttatgagaattatatccaggttaggagcatgaagaga
gctagagatatccgtgatcagctggaggggttgctggaaagggttgagatcgagttatct
tcaaatatgaatgatttcgatgcaataaagaaagctataacgtcagggtttttcccacac
tcagcaaaaatacaaaagaatggatcttatagaactgtcaagcatccacagactgttcat
attcacccaagctctggtttagcacaggtgcttccaagatgggtcgtataccatgaattg
gttctaacaactaaggagtatatgcggcaggtgaccgagctaaagccagaatggctagtg
gaaatagctcctcacttctatcaaatgaaagacgtggaggatgctggggcgaagaaaatg
ccacgtggtgaaggtagggctttgaaagattga
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integrated database retrieval system
