Salvia splendens (scarlet sage): 121751901
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Entry
121751901 CDS
T07627
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121751901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121751901
03036 Chromosome and associated proteins [BR:
sspl03036
]
121751901
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121751901
Coactivators
SAGA/TFTC/STAGA complex
121751901
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121751901
STAGA complex
121751901
TFTC complex
121751901
SAGA complex
121751901
SLIK complex
121751901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Tricorn_2nd
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_NWD2_C
PROPPIN
Beta-prop_ACSF4
PALB2_WD40
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
121751901
NCBI-ProteinID:
XP_042002647
LinkDB
All DBs
Position
10:11884458..11892014
Genome browser
AA seq
670 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLVLQQEKQQSSSKGSNASSTAQIDPDIAKQILSFSEV
DGPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVEKGHIQEARSFFNSFR
GDHEVMHIRDLQKLEGVLSPSHLKEMEFAHSLRQKKAGIKICQYSYDLLLQYLHKSQSIT
MLGIVNEHINFQVSPGQPNSIADDAEYVSFFGGDQDTANLLNQKEIHWGLLEDSLEERLE
KIDAPSMDFEMADVEAREGELEENKKRSDVKQGTTTKKLKKDKVAGATAKAHRSDSVTAP
CVKPELAQPVIPLEVEHSILEDLRNRVQLSSMALPSISLYTFINTHDSLNCASISHDGSM
VAGGFSDSSLKVWDMAKLGQQNVICKLMSPSQGENDLAANEPSSTAGGRNYTLFRGHAGP
VHSATFSPFGDFILSSSSDSTIRLWSSRLNANLVCYKGHNYPVWDVQFSPLGHYFASASH
DRTARIWSMDRIQPLRILAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCLAPFVGHGSCIWSLAFSCEGSL
LASGSADCTVKIWDVATSSRVPKSDENGKNGYTSRPRSLKTLLTKSTPVYALQFSRRNLL
FAAGALSKQL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagagatcgataaagtggttctcgcctacttggacaagaggggtttcaag
caagccggcctcgttcttcagcaagagaagcagcaaagcagcagcaaaggcagcaatgca
tcctccactgcacagattgatcctgatattgctaaacaaatcctctctttctctgaagtg
gatggtcccgctcagtaccaagaaggctatagcaagctacggtcatgggcttatagttct
ctggatcagtaccagcatgagttggttagagttttgtatccagtatttatccatgcattt
atggatcttgtggaaaaaggtcatattcaagaagctcgatctttttttaatagctttcga
ggagatcatgaagttatgcacatacgtgaccttcaaaagctagaaggtgttctttctccc
tcacatctgaaggaaatggaatttgcacattctctaaggcagaaaaaagcgggcatcaag
atatgccaatactcctatgacctacttctacaatatttgcataaatctcaatcaattaca
atgcttggaattgtcaatgaacacatcaacttccaagtgtctcctggacaaccaaactcc
attgctgatgatgctgaatatgtctcatttttcggaggtgaccaggatactgctaatttg
ttaaaccagaaagaaattcactgggggttgcttgaagattctctggaagaaaggttggaa
aagattgatgctcctagtatggatttcgaaatggcagatgttgaagcgagagaaggtgaa
ctggaagaaaataagaaaagatctgatgtcaagcaaggcactacaacaaaaaagttgaaa
aaggataaggttgctggtgctacagcaaaagctcatcgttcagatagtgttactgcacca
tgtgtaaaacctgagctagcacagccagtaataccgctagaggtggaacattctattctt
gaagatttgaggaaccgtgtgcagttgagtagcatggcattgccttccattagcttatac
acttttatcaacactcatgacagcttgaattgtgcttcaatatctcatgatgggtcaatg
gtagccggtggattttcagattcatcattgaaggtttgggacatggcaaagcttgggcaa
cagaatgtaatctgtaagttaatgtctccttcgcagggtgaaaatgatttggctgccaat
gagcctagctcaactgctgggggaagaaattacacattattccgaggtcatgccggacct
gtgcattctgccacttttagtccgtttggggatttcattctgtcttcttcatcagattct
acaattcgactatggagctcaagactgaatgcaaatctcgtctgctacaagggtcataat
taccctgtatgggatgtacagtttagtccacttggccactattttgctagtgcttcacat
gatcgcacagcaaggatctggtcgatggacagaatacagcctctaaggattttggcaggt
catttatctgatgtagattgtgtgcaatggcatgcaaattgcaactatctcgctaccgga
tctagtgacaaaacagtgcgcctatgggatgtccagagtggcgagtgtgttagaatattc
attggtcacagaagtatgatcttaagtttggcaatgtcacctgatggtcgctatatggca
tctggtgatgaagatggtacaataatgatgtgggatcttgcatctggacgctgccttgcc
ccattcgtcggccatggctcttgcatttggtcactggctttcagctgtgaaggttcgctt
ctagcttcaggttctgctgactgcactgtgaagatatgggatgtagctacaagctcaaga
gtgccaaaatcagatgagaacggcaaaaatgggtacacaagcagaccgagatcgctgaaa
accttgctcaccaaatctactcctgtctacgctctgcagttctccagaagaaacctttta
tttgctgccggcgctctctcaaagcagttgtag
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