Salvia splendens (scarlet sage): 121751974
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Entry
121751974 CDS
T07627
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121751974
03015 mRNA surveillance pathway
121751974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121751974
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121751974
mRNA cycle factors
P-body specific factors
121751974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
BSMAP
Xpo1
Motif
Other DBs
NCBI-GeneID:
121751974
NCBI-ProteinID:
XP_042002752
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All DBs
Position
10:11646899..11656039
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AA seq
1188 aa
AA seq
DB search
MEPGDGEQQEKHDDERRPDDEETIARLEEFKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRGVNLSKFVSEAVAAICDAKLKAADIQSAVQIC
SLLHQRYKEFAPSLVQGLLKVFVLGKSVEDLDADKNSRAMKKRSTLKLLLELYFVGVIED
TGIFVNIIKDLTSPEHLKDRDATQTNLSLLASFARQGRFLLGFPLTDQDILEEFLKRLNI
TADQKKIFRKAFQTYYDAVVELLLSEHASLRQMEHENAKILNAKGELSEENATSYEKLRK
SYDLLSRGVSSLAEALDMQPPVMPEDSHTTRVTSGEDVSSPVASKDSPTLEALWDDDDTR
AFYECLPDLRAFVPAVLLGEVESKSNEQSSKTQDLPADMTPESDKGQVVIQENPEVPADS
TIVQEDKEGKDNDKEEKDKEKAKDSDKEKGKEKDAGRGEIEKDKTKGLDGTNLEALLHRL
PSCVSRDLIDQLTVEFCYLNSKSTRKKLVRVLFNVPRTSLELLAYYSRMVATLSTCMRDV
ASMLLLLLEEEFNTLINKKDQMNIETKIRNIRFIGELCKFKIAPASLVFSCLKACLDDFT
HHNIDVACNLLETCGRFLYRSPETTVRMSNMLEILMRLKNVKNLDPRQSTLVENAYYLCK
PPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEEYLLKCFLKVHK
GKYGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRVGLELNEYGMEQQRIAYMRFLGEL
YNYELVDSSVIFDTLYLILSFGHGTTEHDTLDPPEDCFRMRMVIILLETCGHYFDRGSSK
RKLDRFLIHFQRYILSKGVLPLDVEFDLQDLFVELRPKMIRYSSFEEVNVALSDLEELER
RVSEKAHNEKYSDSEKTPRRTSSGTLSVNGQSTGNGTEENGEVHEDDAGETDSDSGSGTT
ENIGRDDDDETDQDEVGESEDEYDDGRDPASDDDDKVRVRQKVAKVDPQEVADFDRELRA
LMQESLDSRKLELRSRPTINMMIPMNLFEGSVKEHHGRGTEGESGDEITDDGIGGSKEVQ
VKVLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGG
MQPLNSSHSGGRVSNRGHSWDGQHRSGGPRHRQHIYHSGAGVYYGRRR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggaacccggtgacggagaacaacaagagaagcatgacgacgagcgaagacccgatgac
gaggaaaccattgcccggcttgaggaatttaagaaatccattgaagcgaaaatggctttg
cgtcagagtaatttgaatcccgagaggcctgatacaggctttctcaggacacttgactct
agcatcaagcgcaatacagcagtcattaaaaaattaaagcaaatcaatgaggagcagcga
gaaggtctaatggatgaattgcgtggtgtaaatttaagcaaatttgttagtgaagccgta
gctgcgatttgtgatgctaagcttaaagcagctgatatacaatctgctgtacagatttgt
tctttactccatcagaggtacaaagaatttgctcctagtcttgttcaaggtctcttaaaa
gtttttgtactgggaaaatctgtggaggatctcgatgcagacaaaaattcaagagccatg
aagaagcggagtaccttgaagcttctcttggagctttactttgttggggttatagaagat
actggtatatttgtgaacatcattaaggatcttactagcccagagcatttgaaggatcgt
gatgcaacacagacaaatttgtcccttcttgctagttttgctcgacaaggaaggtttctt
cttggatttccattaacagatcaagatattcttgaagagtttcttaagagacttaatatt
acggcagatcagaaaaaaatcttccggaaggctttccagacatactatgatgctgttgtg
gaacttcttctatctgagcatgcttcacttcgccaaatggagcatgaaaatgcaaagatt
ttgaatgccaaaggtgaattgagtgaggaaaatgccacatcatatgaaaagctgcggaaa
tcgtatgaccttctaagtcgtggcgtctcatctttagcagaagcacttgatatgcaacct
cctgtgatgccagaggatagtcatacgaccagagtcacatcaggggaggatgtttcatct
cctgttgccagcaaagattctcccactctcgaagccctgtgggatgatgatgatactaga
gccttctacgagtgccttccagatcttagagcatttgttcctgcggttttgcttggagag
gttgaatcgaagtcgaatgaacaatcttcgaagacccaggatctgccagctgatatgact
cctgagtcagataaaggtcaagttgttattcaagaaaatcccgaggttcctgctgattct
acaattgtacaagaggataaagagggcaaagataatgataaagaagaaaaggacaaggag
aaagccaaagactctgacaaagagaagggtaaggagaaggatgctggaagaggagaaatc
gaaaaggataaaaccaaaggtcttgatggaactaatcttgaagctttactgcataggctt
ccaagctgtgttagccgtgatctgattgaccagctcacagtcgagttttgctatcttaac
tcaaagtccactaggaaaaagctcgtgagggtattgttcaatgtgccaagaacatctctt
gagctgttggcgtactactcacggatggttgctacactgtctacgtgtatgagagatgta
gcatccatgctcttactgttgttggaggaagagttcaatacattaattaataagaaggat
caaatgaatattgaaacaaaaatcaggaatatacgatttattggagaactttgcaagttt
aaaattgctcctgccagcttagttttttcctgtctaaaggcttgtttagatgatttcacg
caccataatatagatgtcgcttgcaatctacttgagacgtgtggccgctttctctaccgg
tcccctgagaccactgtccgtatgtcaaacatgctagagatactgatgcgcttgaaaaat
gttaagaatttggatccccgtcaaagcaccttggtggaaaatgcttattacttatgtaag
ccaccagaaagatctgcacgagtctccaaagttcgtcctcctttacatcagtatattagg
aaactacttttctcagatcttgataagtcctccatcgagcatgttctaagacaactgcgc
aagctaccttggagtgaatgtgaggagtatcttttaaagtgttttctgaaggttcacaaa
gggaaatatggtcagattcatttgattgcatcacttactgctggtctgagtcgctatcat
gatgactttgcagttgccgttgttgatgaggttttggaggaaattagagtgggtctagag
ttaaatgaatatggaatggagcaacaacggattgcatacatgcgtttcttgggggaactg
tataactacgaacttgttgattcatctgtcatttttgatacgctctatctaattctttct
tttggacatgggacgacagagcatgatacattggatcctccagaggactgttttcgtatg
agaatggtcatcatacttcttgagacatgtgggcattattttgatagaggttcatcaaaa
aggaagcttgatcggttcttgatacacttccagaggtatattctgagcaaaggtgtcctt
cccctggatgttgaatttgatctgcaggatttatttgttgaattgaggccaaagatgatc
cgttattcatcatttgaggaggttaatgttgctctatctgatcttgaagaacttgaacgt
agagtttcagagaaagctcataatgaaaagtactcggactcagaaaaaactccacggagg
acaagttcaggcactctatctgtcaatggacaaagtactggtaatggcactgaggaaaat
ggtgaagtgcacgaagatgatgctggggagacggatagtgactctggaagtggcaccact
gagaatattggtcgtgatgatgatgatgaaactgaccaagatgaggttggtgaaagtgaa
gatgaatatgatgatggtagggatcctgcttcagatgacgatgataaggttcgtgtaagg
cagaaggtagccaaggtagacccacaggaggtggctgattttgaccgggaactgagagct
ctaatgcaggagagtttggattcaagaaagttagagttgcgctcacggccgacaataaat
atgatgattcccatgaatttgttcgagggctcggtcaaggaacaccatggaagaggaact
gaaggtgaaagtggtgatgagataacagatgatgggattggtggaagcaaggaagtccag
gtgaaggtgcttgtgaagcgtggtaacaagcaacagacaaagcagatgtatatcccccgt
gattgctctctcgtgcagagcacaaagcaaaaggaagcagccgagcttgaagagaaacaa
gacataaagcgtcttgtcttagaatacaacgatagggaagaggaggaactgaacggaggt
atgcagccactaaactcatctcacagtggaggtagagtgtcaaacaggggccattcatgg
gatggacagcataggtctggagggccacgccatcggcagcatatttaccattctggtgcc
ggtgtttactatggaaggagaagatag
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