Salvia splendens (scarlet sage): 121752037
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Entry
121752037 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121752037
09124 Replication and repair
03420 Nucleotide excision repair
121752037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121752037
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121752037
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121752037
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121752037
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121752037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
121752037
NCBI-ProteinID:
XP_042002849
LinkDB
All DBs
Position
1:41110290..41120170
Genome browser
AA seq
1833 aa
AA seq
DB search
MDLRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI
DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKIVLSILRSVCFNCSKILADEEEPK
FKQAMRIRNPKNRLKKILDACKNKSKCEGGDEIDVRDQDSDEPVKKSRGGCGAQQPKISI
DGMKMVAEYKAQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPKPLWTGKQVFNLIIPRQIN
LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINTAKNEVNELIRAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP
LESLKLKKLDFSDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYL
LGTEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDIHPMEIVEAVDKLQERLKVVV
GDDYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAAG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PGVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEVI
DPDKVSPWLLRIELNREMMVDKKLSMADIAEKITAEFDDDLSCIFNDDNAEKLILRIRIM
NEEAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKA
ENEWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT
PYHDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPTYSPTSPSYNPSARYSPSQAYSP
TSPKITPSSPYSPSSPSYSPTSPSYSPSSPSYSPSSPYSSGGNAGYSPSSPQYSPSGGYS
PSAPGYSPSSASQFSTQMDDKDNKSVKDDKGNQ
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcgcttccccttctcgccggcagaggtcgcgaaagtccgccttgtccagttc
ggcatactcagccccgatgagattagacaaatgtcggttgtgcatatagagcacagcgag
acgacggaaagaggcaagccgaagatcggtggtttgagcgacccgcgtttggggacgatt
gatcggaagatgaagtgcgagacttgtatggccaacatggctgactgtcccggtcatttt
ggtcaccttgagctcgcaaaacctatgtttcacattgggttcatgaagattgtgctcagt
attctccgcagtgtctgcttcaattgctccaagattttagctgacgaggaggaaccaaag
ttcaagcaagcaatgagaattagaaaccctaaaaataggttaaagaagatattagatgcc
tgcaaaaacaaatccaaatgtgaaggaggtgatgagattgatgtacgagatcaagattct
gatgaacctgtgaagaagtctcggggtggatgtggtgctcagcagccaaagatttctata
gatgggatgaagatggttgctgaatacaaggctcagaagaagaaaagtgatgatcaggat
cagatgcctgaacctgttgaaaggaaacaacaactctctgcggagaaggtgcttagcata
ttgaagagaattactgatgaagattgtcagttgttgggcttgaatccaaaatatgctcgc
cctgactggatgattcttcaagttcttccaatccctcctcctccagttaggccttctgtg
atgatggatacttcttcccggagcgaggatgatttaactcatcaactggccatgatcatt
aggcacaatgagaatttaaagaggcaggagcggaatggggctcctgcacacatcatctca
gagtttgcacagttgctgcagtttcatgtggctacatactttgacaatgatttacctggt
caaccaagagctacccaaagatctggcagacccattaaatcaatatgtagtaggctcaag
gcaaaagaaggtaggataagaggcaacttgatgggtaagcgggtagatttttcggctcgg
actgtgatcacacctgacccaacaatcaacattgatcagctgggtgtaccttggagtatt
gccttaaatcttacatatcctgaaactgtaactccatataatattgaaagattgaaagag
cttgtggaatatggaccccatcctccccctggtaaaactggtgcaaaatatattattagg
gatgatggacagaggcttgatctccggtacttgaaaaagagcagtgatcagcatctggaa
cttggatacaaggttgagcgacacttaaatgatggagactttgtcctgttcaatcggcaa
ccgagtctccataaaatgtccattatgggccacagaatcaagattatgccttattcaact
ttccgcttaaatttgtctgtcacttcaccctacaatgctgattttgatggagatgaaatg
aatatgcacgtgcctcagtcatttgaaactagagccgaagttttggaactaatgatggtt
ccaaaatgcattgtgtcacctcaagccaatcgacctgtaatgggaattgtgcaggattca
ctattaggatgtcgtaaaattactaagagagatacatttattgagaaggatgtttttatg
aatatcctaatgtggtgggaggatttcgatggcaaagtacctgctccaacaattctgaaa
cctaagcctctttggactgggaaacaagtatttaatttaatcataccaagacagataaat
ctattaaggtattcagcatggcatcaagaaactgaaaagggatttattactccgggagat
actcaagtacgtatagagaaaggggagttactttcaggcactctatgcaagaaaacactt
gggtcatctagtggaagtctcatacatgttatttgggaagaagttggtccagatgctgca
cggaaatttttgggacatacacaatggcttgtcaattattggcttttgcagaatgctttt
agcatgggaattggtgataccattgctgatcatgatacaatgacaaagatctctgaaact
attaacacagctaagaatgaggtgaatgagcttatcagggctgcacaagaaaagcaattg
gaggctgagccaggaagaacaatgatggaatcgtttgagaacagagttaaccaggtgttg
aataaggctcgtgatgatgctggaagcagtgctcagaagagcttggcagaaagtaacaac
ctcaaagctatggtcactgcaggatctaagggaagtttcatcaatatttctcagatgacc
gcgtgtgttggccaacagaatgttgaaggcaagcggattccttttggttttgtggatcgc
acacttccacacttcactaaagatgattatggtccagagagtcgtggttttgtggagaac
tcatatctccgagggctgtctcctcaagagttctttttccatgccatgggtggtagggaa
ggtctcattgacactgcagtgaaaacttctgagactggatatattcagaggcgactggtg
aaggctatggaagatatcatggttaagtatgatggtactgttagaaattccttaggtgat
gtcattcagtttctgtatggggaagatggtatggatgcagtttggattgaatcgcaacct
ttggaatcactgaagttgaagaaattggatttcagtgacatgtacaaatatgagattgat
cacccaaattggaatcctaattatatgttgcctgaagctgtggaagatctgaaaacgatt
cgcgaaatccgcagtgtgtttgatgcagaggttcagaaacttgaagctgataggtatcta
cttggaacagagattgccacaactggtgacaattcttggcccctccctgttaacatcaag
aggcttgttttgaatgcacagaagacctttagagttgatttccggagaccctctgatatt
catccaatggagattgtagaagctgttgataagttgcaagaaaggcttaaggtggttgtt
ggtgatgattatctgagtttggaagcacagaagaatgctactcttttcttcaacatattg
cttcgtagtgctttagcaagcaaaagggtactgaaggagtacagacttacccgtgaagct
tttgactgggtaattggcgagatagaatctcgttttcttcagtcacttgttgctgctgga
gaaatgataggatgtgttgctgcacaatccattggtgaacctgccacacagatgactctc
aatacatttcactatgctggtgtgagtgctaagaatgttactttaggtgtaccaaggttg
agggagattattaatgttgctaagaaaattaaaacaccctctctctcggtatacctgaag
cctggtgtaagcaaaaccaaggagaaggccaaaaatgtccagtgcgccctggagtataca
actttgcggagtgtaacacaagcaacagaggtatggtacgatccagatcctacgagcact
attattgaggaagatgttgaatttgtgaagtcttactatgagatgccagatgaagtgatt
gaccctgacaaagtctctccgtggttgcttcgcatagagttaaacagagaaatgatggtg
gataagaaactcagcatggctgatattgcagagaagattactgccgaatttgatgatgat
ctgtcgtgcatatttaatgatgataatgctgaaaagcttatccttcgtattcgtattatg
aatgaggaagcccctaagggtgagttaaatgatgaatcggctgaggatgatgttttcctg
aaaaagattgagggtaacatgctcacagaaatggctcttcgaggaataccggatatcaat
aaggtgttcataaagaatggcaaggtgaataagtttgatgaaaacgaaggttttaaggct
gagaatgaatggatgcttgacacagaaggtgttaatcttttagctgtcatttgccatgaa
gatgtagatgcaagtaggacaacaagcaatcacttgattgaagttattgaagttcttggc
attgaggcagttcgcaaagcattgctcgatgagctgcgtgttgtcatatcgtttgatggg
tcttatgttaactatagacatttggcaatattgtgtgataccatgacatatcgtggtcac
ttgatggctatcactcgtcatggtattaatcgcaatgatactggccccatgatgagatgt
tcctttgaagaaacagtggacattctacttgatgctgctgtgtatgcagaaactgattac
ctcaggggtgtcactgagaatatcatgttaggtcagcttgcacctattggcacaggtgat
tgtgccttgtatatgaacgaagagatgctaaaacaagctattgagatccctttgcccagt
tatatggaaggtggtctggagtttggcatgactcctggccgttcgcctatatcagggacc
ccatatcatgatggcatgatgtcaccaaattatatgctgagtccaaatcttcgattatca
cctgtttcagatgctcagttttctccatatgtgggtgggatggcattttctcccacgtca
tctccagggtacagcccgtcatctccaggatacagcccatcatctcctggatacagccct
acttcccctggttacagccctacttcccctggttacagccctacttccccaacatatagt
cctagttctcctggatatagccctacaagccctgcatattctcccaccagcccatcttat
tcgccaacatccccttcctacagccctacatctcccagctacagcccaacttctccgagc
tatagcccaacttctccgagctacagcccaacttctccagcatacagcccaacgtcacct
gcgtacagcccaacgtctccagcttacagccccacctcaccctcgtacagccccacatca
ccgtcttacagccccacctcaccctcgtacagccctacctcaccctcgtacagccctacc
tcaccctcgtacagccccacctcaccctcgtacagccccacctcaccttcatatagccct
acctcacctgcctacagcccaacttcacctggatacagccccacctcaccaacctacagt
ccgacctcaccaagttacaatccttcagcaaggtacagcccttcacaagcatattcaccg
acaagtccaaaaatcacaccttcaagtccatacagtccatcttctccaagttacagccct
acatcgccatcatattctccttctagtccaagttacagtccaagcagcccatacagttca
ggaggaaatgctggctatagtccaagctctccacagtatagccccagcggtggatactcc
cccagtgcgccagggtactccccatcatctgccagccaattctctacccaaatggatgac
aaagataacaagagtgtgaaggatgacaagggcaatcaataa
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integrated database retrieval system
