Salvia splendens (scarlet sage): 121752081
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Entry
121752081 CDS
T07627
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121752081
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121752081
microRNA pathway
RISC loading complex
121752081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
121752081
NCBI-ProteinID:
XP_042002894
LinkDB
All DBs
Position
10:9934173..9971921
Genome browser
AA seq
1627 aa
AA seq
DB search
MDAGDSFSAEVNGISERLMSLPIDGDEEQQIPVKSEKDPRKIARKYQLDLCKKALEENVV
IYLETGCGKTHIAVLLIYEMGHLIKKPQKNICIFLAPTVALVQQQAKVIANSIDFKVGIY
CGSSAQVKSPHYWKKEVEENEVLVMTPQILLHNLSHCFIKIEVIALLIFDECHYAQLDSN
HPYSEIMKIFYKTDVVKLPRICGMTASPKSGKGGSIDGLEALLRAKVYTVEDKDELEKFV
TSPKVNVYYYSSEDGMSLPHIIYARKLEEIKNQSMSALRINSLDQSTLMSTKKQLQKLHC
NLIFCLENLGLWGALQASHIFLKGDHFENTEVVEEESSSESNLCNKYLHQVVSVLASDCT
GDGKEADLSTVEVLKEPYFSKKLLRLIGILSSFRLQPNMKCIIFVNRIVTARSLSHILRN
LKFLSAWKCGFLVGVHVGLVSRKNTNIILDKFRSGELNLLVATKVGEEGLDIQTCCLVIR
FDLPETVASFIQSRGRARMPQSEYAFLVDRGNLKELGLIEHFKKDEALMNEEISLRKSSN
LITSFEERTYKVDTTGATISSIMSISLLHHYCSKLPHDEYFQPKPQFFYFDDIDGMVCTI
ILPANAPIHQIVSSPQSSTDAAKKDACLRACKALHEIGALTDYLLPEQDDKHEELTEDLS
DSGGSSEEDSRAELHEMLVPAALRKPWTEPQSSTCFSCYYIDICPTPADRDYRRFGLFMK
DPLPEGAGQMKVELCLARGRMVRSQLIPYGVTRFHKDEIAAAEMVQKMFLQIILDRHKFV
SEYVSLKNDDVYNSSSATFYLLLPLEPIKHGSISVDWALIKRCLSSPIFKLSRLDVGDQT
SQSSKYLHLSNGHFSSDDVVNSLVYVPCNRKFFFISAVYWEKNGYSLHGASKDHVQHYKE
KFDIHLAYPDQPVLKAKQLFLLENLLRKKKLTEEWREKEEHSFELPPEICQLKVIGFSKD
IGSSLSLLPSIMHRLESLLVAIELKEKLAESFPEGAEVTTARVLEALTTEKCSESFSLER
LEVLGDAFLKFAVGRCLFLKHDALDEGQLTRRRSNIVNNSNLLKLATAKKLQVYIRDQSF
EPDKFYAFGRPCPLNCTKETQEHIHSDYSKNNDKNSGVRCNKCHHWLYNKTIADALEALT
GAFIVDSGFKSATAFLKWVGVEVDFTLPKIDNICSASESFLPLSSEIDVKALENLVGYKF
SHKGLLIQAFVHPSFNNLLGGCYQRLEFLGDAVLDYLITSYLYSVYPSLKPGHLTDLRSA
CVNNTSFADVAGKWSFHKYMICDSSVLREAIDKYVNTGKSGTEKEHIEEKACPKALGDLV
ESFTGALFLDTGFNLELVWKTMLFLLDPIVSISKLECNPLREIYELSQSYNWDLQFSSSK
KDNKFRVEAKVDDKNVSASALAINISGKAAKRVAARQLFESLKAQGYKTKSPSLKEVLTK
SEVRAAKLIGYDETPSTGTAKSGGVEDFGSDDVAQDYEVRNISTLKPKPISRPIELLSHC
KSPEVCVTQPPSSSFRSDLPAAKLSNGSNSNGKGAPTNVCAKSRLYELCTANCWRPPVFE
CCQDIGPSPLKEFCFKVMLEIEELPNESFEFYGELQARKKDAAETAADAALWYLENEGYT
WGRNRDK
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atggacgccggcgattccttctccgctgaggtgaacgggatatcggagcggcttatgtct
ctaccgatcgacggcgacgaggaacaacagattccagtgaagtcggagaaagacccgaga
aagatcgctaggaagtaccagttagacctctgtaaaaaggcattggaggagaatgtagta
atatatctggaaacaggttgtgggaaaactcatattgcggttctacttatatatgagatg
ggacaccttattaagaaacctcagaagaacatatgcatttttcttgctcctacagttgct
ttggttcagcagcaagcaaaggtcattgcaaattctattgacttcaaagttgggatctat
tgtggaagctcagctcaggtaaagagtccccattactggaagaaggaagttgaggagaat
gaggtcctagttatgaccccacagatacttctgcacaatttgtctcactgctttatcaag
attgaggtgattgctcttctaatatttgatgagtgccattatgcgcaacttgatagcaat
catccttattctgaaattatgaagatcttctacaaaacagatgtcgtgaaacttcctcgt
atttgtggcatgactgcatctccaaaatcaggaaaaggtggctcaatagatggtcttgag
gcattgctgcgagcaaaggtttatactgttgaagacaaggatgagctggaaaaatttgtc
acatcccccaaagtgaatgtgtattattatagttcggaggatggcatgtctttgcctcac
attatttacgctaggaaacttgaggagataaagaatcagtctatgtcagcacttcgaata
aattcacttgatcagagtactctgatgagcaccaaaaagcagcttcaaaagctgcattgc
aatttgatcttttgtctagaaaaccttggactttggggagcattacaggccagccatatt
ttcctgaagggtgatcattttgagaacaccgaggttgtggaagaagagagttcaagtgaa
agtaacttgtgcaataaatatttgcatcaggttgtatcagttcttgcttctgattgcact
ggagatggtaaggaagctgatctgtccactgttgaagttttgaaagagccttacttctca
aaaaagctcttacggcttattggaatattatccagctttaggttgcagcccaatatgaaa
tgcattatatttgttaatagaattgttactgcaagatccctctcacatattcttcgaaac
ttgaagttcttatcagcttggaagtgtggtttccttgtgggagtgcacgttggacttgta
tcacgtaaaaacacaaatatcattcttgataagttccgatctggagagctaaatctatta
gttgcaacaaaagtgggcgaagagggacttgatatacagacatgttgccttgtaatacgt
tttgatcttccagaaacagttgcaagttttatccagtctagaggtcgtgcacgtatgccc
cagtctgaatatgcatttttggtggacaggggcaacctgaaggaactcgggttgatcgaa
cactttaaaaaggatgaagcactgatgaatgaagaaatttcattgagaaaatctagtaat
ctgataactagttttgaagagagaacctataaagtggatactactggggcaacgattagt
tctataatgagcatctcattgctgcaccactattgttcaaaactgcctcatgatgagtac
tttcaaccaaaaccccagtttttctactttgatgatatagatggaatggtttgcaccata
attctcccagccaatgctccaattcatcaaattgtaagttcacctcaatcttccacggat
gcagctaagaaagatgcctgtttgagagcatgcaaggctctacatgaaattggagcactg
actgattacctcttgcctgagcaagatgataaacatgaggaattgactgaagacttatct
gattctggtggcagcagtgaagaggattcacgagccgaattacatgagatgcttgttcca
gctgcccttaggaaaccatggacagaacctcagagctcaacttgctttagttgttactac
attgatatttgtcctaccccagcagatagagattacagaaggtttggtcttttcatgaag
gatcccctcccagaaggggctggacaaatgaaggttgaactttgtttggctcgtggtaga
atggtgaggtcacagcttattccatacggagttactagatttcataaagatgagattgcc
gcagctgaaatggtgcagaaaatgtttctccaaattattcttgacaggcataaatttgtg
tctgaatatgtgtcactaaaaaatgatgatgtctataactcaagctcggcaacattctac
ctattgcttcctcttgaaccgataaaacatggcagcatctctgtggactgggcactaatt
aagagatgtttgtcatctccaattttcaaactttcacgtcttgatgtgggtgatcaaact
tctcaaagtagcaagtacttgcatctttccaatggtcactttagctcagacgatgttgtg
aatagtttggtgtatgtcccatgcaatcgtaaatttttctttatttctgctgtttactgg
gagaagaatggatatagcttacatggtgcatcaaaggaccatgtgcagcactataaggag
aagtttgatattcatcttgcataccccgatcaacctgttttgaaagccaaacaacttttt
ctcttggagaatttattgagaaagaaaaaacttacagaagaatggcgagaaaaggaggaa
cactcttttgaattgcctcctgagatttgtcagttgaaagttattggtttctctaaagat
attgggagttcattgtctctgttaccatcaatcatgcaccggcttgaaagcttacttgtg
gccattgagttgaaggaaaaattagctgaatctttcccagagggagctgaagttaccact
gctcgtgttcttgaagcactcacaacagagaaatgctctgaaagcttttctcttgaaaga
cttgaagtgcttggagatgcatttcttaagtttgcggttggcagatgtctattccttaag
catgatgctttagatgaagggcaactaactagaagacgttccaacatcgtgaacaattct
aatctactcaagcttgcaacggcgaagaagttacaggtctacattcgagatcaatcattt
gagcccgacaaattctatgcatttggtcgtccgtgccctttaaattgcacaaaggaaact
caggagcacattcactcagattatagcaagaacaatgacaaaaattctggagttagatgc
aacaaatgtcatcactggttatacaacaagacaattgctgatgctcttgaggcacttaca
ggagcttttatagtagatagtgggtttaaatcagcaactgcatttcttaagtgggttggt
gtagaagtagattttactctcccaaaaattgataatatctgctctgccagtgagtcattt
cttcctctttcgagtgagattgatgttaaagcccttgaaaatctggtaggttacaaattt
tcccataagggtttgctcattcaggcatttgttcatccatctttcaacaatcttttggga
ggttgctaccagagacttgagttccttggagatgccgtcttggattatttgatcacttcc
tatctgtattctgtctatccaagcttaaaacctggccatttaacagatttgagatcagca
tgcgtgaacaacacttcatttgctgatgtagctggaaaatggtcctttcacaaatatatg
atttgtgattctagtgttctccgagaagcaatagacaaatacgttaacactggtaaatca
ggaacggagaaagagcatatagaagagaaagcatgtccaaaggcccttggcgacttagtg
gagtcttttacaggtgccctatttcttgacacagggttcaatttggaactcgtctggaag
acgatgctcttcttgctggaccctattgttagtatttcgaagctggaatgcaatcctctg
agagaaatttatgaactttcccaatcctataactgggacctgcagttttcttcatcaaag
aaagacaacaaatttagagttgaagctaaagtggatgataaaaatgtttctgcctcagct
ttggctatcaacatcagtggaaaagctgccaaaagagtggctgcaagacagttatttgaa
tctttgaaggctcaaggttacaagacaaagtcaccatcactgaaggaagttcttacgaag
agtgaggtgagggcagccaaattgattggatatgatgagacaccctctactggaactgct
aaatctggtggcgtagaagattttggtagtgatgatgttgcacaagattatgaagttagg
aatatatcaactctgaagcccaagcccatttccagacctatagagcttctttcgcattgc
aagtctccagaagtctgtgttacacaacccccaagcagtagtttccgaagtgatctccct
gctgccaaactaagtaatggctcaaactcgaatggaaaaggtgctcccaccaatgtatgt
gcaaaatcacgtctatatgaattatgtactgctaactgctggagaccacctgtctttgag
tgctgccaagacatcggaccaagtcccttgaaggaattctgtttcaaggtcatgttggaa
atcgaagagttgccaaatgagtcattcgagttctatggggaactccaggccaggaagaag
gatgcggccgagacagcagcagatgctgcactgtggtacttggaaaatgaagggtataca
tggggtagaaatcgtgacaagtga
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integrated database retrieval system