Salvia splendens (scarlet sage): 121752251
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Entry
121752251 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121752251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121752251
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121752251
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Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_8
Motif
Other DBs
NCBI-GeneID:
121752251
NCBI-ProteinID:
XP_042003158
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Position
10:complement(22966882..22973499)
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AA seq
827 aa
AA seq
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MDSSSSSVTLNTRDGSPSAEGLAKEAAVLFQSGMFADCLRVLNQLPQKEDDPKVRHNIAI
AESLQSGCSDPRRLIKALEKIKEQSEELACASGEHLEVSSNNGSEHTSSIKGNSAPRHPI
SPVLYNDGFDTSVETYNIAVIWYHLHEFSRSFSYLDTLYQTIEPIREGTALCICLLLLDV
ALLSHNASRSADVISYMEKVYVSSVGNQVDNGSLAHQQPLLVSKSTSFSNNSTLQDGSHP
DSTSDNSLTRTLSEEALEDEHWQLLSSLDISGQNLQRPGIVSANDLQRIQPEGLISTADL
KLRLHLYKVRFLLLTRNLKAAKREVKIAMNLIRGKDYPLALYLKSQLEYVCGNHRKAIKL
LMASTNSIEMGFSSMYYNDLGCIYYRLGKHHTSGVFFSKALSNSSAALKEKPPKLLTLSQ
DKSLLIMYNCGVQALARGRPFHAARCFQKASLIFYNRPLLWLRMAECCLMALDKGLIKSS
AATVISEIEANVIGRGKWRQLALRYGSSNGQGRYVGDSSISFDAKHPDLSMSLAWQSLVN
ALFLLDSSDKNYFRAAKTPGSEENESGEAPLLPSSNVKNATGGDPKAPTVASSSSPANAN
GKVKAHTGGKNLGGTLDNCILDYKHICLKEKLMIRQAVLADLAFVELGLGDPSKALSTAS
SLLKLPDCSKMYIFLGTVYAAEALCLLSRPKEAAEHLAMYMPDGNNIKLPYSQEDCEKWT
VEKVADTDESHGGTIAVSSALSTGDESRALVFSSPEEARGLFCANFAAHFALQGDFEQAE
RFLTNAFSDIPNSSQAILTAIYVDIKRGKTQDALAKLRHHRGIRFHN
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggattcctcctcttcgtcagtgacattgaataccagagacggatcaccgtccgcagag
ggtcttgctaaggaggctgccgtgctctttcagagtgggatgttcgccgactgtttgaga
gttttgaatcagttaccgcagaaggaggatgatccaaaggtgcgtcataatattgccatt
gctgagagcttacaaagtggatgttcagatcctagaaggcttattaaagcactggaaaaa
atcaaggaacaaagtgaagaacttgcatgtgcatctggagaacacctagaggtttccagc
aacaatggaagcgaacacacttccagcatcaagggaaatagtgctccccgacatcctatt
tcacctgttttgtacaatgatggatttgatacctcagtggaaacttacaacatagcagtc
atctggtaccatcttcatgaattttcaagatcattctcatatttggacactttgtatcag
accattgaacctattcgtgaggggacagctctctgtatatgccttttgctgcttgacgtc
gcattactttctcataatgcatcaagatctgccgatgtgataagctacatggagaaggtt
tatgttagtagtgtgggcaatcaagtagataatggatccttggcacaccaacaacctcta
ttagtttcgaaatctacatcattttccaacaattcgacccttcaagatggttctcaccct
gattctacttcagataattccttgactagaacattatcggaggaagcacttgaagatgaa
cattggcagttactatcttctcttgacataagtggacagaatcttcaaagacctggcatt
gtctctgctaatgatcttcaaagaatccaaccagagggtttgatatcaactgctgattta
aagcttaggttacatctttacaaggttcgctttctgcttctcaccaggaacctgaaagca
gccaaacgtgaggtgaagatagctatgaatctgattcgtggcaaagattatcccctggct
ctctacctaaagtcacaacttgaatatgtttgtggaaaccaccgcaaagcaattaagctt
ttgatggcatcaactaacagcattgagatgggattctctagcatgtactacaatgatctt
ggctgcatctattatcggcttggtaagcatcatacatcaggagtatttttttccaaagcc
ttaagtaatagctcagctgcactgaaagagaagcctccaaaacttctaactttgtctcag
gataaatccctcctgattatgtataattgtggtgttcaagcattagcccgtggcagaccc
tttcatgcagctcgctgctttcaaaaggccagcctcatcttttataacagacctcttcta
tggttaagaatggccgagtgctgtttgatggccctagacaagggattaataaaatcatcc
gcagcaactgtgatttctgagatcgaagccaatgtcattggcagggggaaatggagacag
cttgctctaagatatggttcatccaatggtcagggaagatatgttggtgatagttcaatt
tcatttgatgcaaaacatcctgatctctcgatgtctcttgcctggcagtcccttgtaaat
gctttgttcctattagactcttcggacaaaaattatttcagggctgccaagacccccggt
tccgaggaaaatgagtcgggagaagcaccactattgccgagttcaaatgtcaagaatgcc
actggtggtgatcccaaagcacctactgtagcttctagctcaagtccagctaatgccaat
ggtaaagtaaaagcgcacacaggtggaaaaaatctgggtggcacattggataactgcatt
cttgattacaaacatatttgcttgaaggagaaactgatgataagacaagccgtgcttgct
gatttagcatttgtagagttgggactaggagatccctcaaaagctctttcaactgcaagt
tccctactaaaacttcctgactgctcaaagatgtacatatttttaggcaccgtgtatgct
gcagaggcattatgcctgttaagtaggccaaaagaagctgctgagcatttggcgatgtac
atgcccgacggtaacaatattaagcttccatattcccaagaggactgcgagaagtggaca
gtggaaaaagtggccgacactgatgagtcgcatggtggcacgatagctgtttctagtgct
ctttcaacaggagatgaatcccgagccttggtgttttccagccccgaggaagctaggggg
ctgttctgtgcaaattttgctgcccactttgcactgcagggagactttgagcaggctgaa
cgatttctaaccaacgcgttttctgatataccgaatagttcccaagctattcttactgct
atttacgtcgatataaagcgtggtaaaactcaagacgctcttgccaagttgagacatcac
agaggaatcagatttcataactga
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