Salvia splendens (scarlet sage): 121752304
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Entry
121752304 CDS
T07627
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121752304
03015 mRNA surveillance pathway
121752304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121752304
03041 Spliceosome [BR:
sspl03041
]
121752304
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121752304
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
121752304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
121752304
NCBI-ProteinID:
XP_042003233
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Position
10:complement(4864350..4871638)
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AA seq
892 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFPHELENLVDMTKVKIDVMKPWIAKRVTELI
GFEDEVLINFIYGLLEGEAVNGKQIQISLTGFMERNTAKFMKELWLLLLSAQQNVSGVPQ
QFLDAKEEEAKIKKAETDRIANEIQRKKEKEKQEFYEEKAKMDGDGANSRDNHSELEPNV
KHYPRGSAVQQENEKERHNRNGRRRSSRGSRSPDSPNHSLSSREQRRSRSVSGGPPSRSR
SISSERRARSPPRRSITPRRRHVVRRSRSPRRRSYLNRRSRSNSRRRSPSPVRYRVRSPR
RHRSRSPLRRRSRSPLRRRSRSPVRRRSRSPVRRRSRSPVQRKSRTPIRRSPVQYKSRTS
SRRRSLSPVHSMSPSPIRGRSPGHRRSPSPVRRRSRSPLRRHSPSPRHQSPSPARRQYRR
SLSTSSHQSMSPVRRRPSMHGRKRSCSPGSRRSPAPQELSSPSNIRRNSLSPVRRGSMKH
TRSPIHSPGENARQKNYSPAPHASPSERAEVQSGNRKGTKYAERRSVVSLRSPQRDVLDQ
RDIGGKPRNFSPSLEKSPSGSDASRGRSGSEERRSVSPRGRPRQRRGRMIPPESPNPSRK
TVDPKNRRDDSRTSLDDENNLPSREIGRYKNRSSGKSSLKPVRDKDTLETGDTHGLADST
QSREQQLMNSDRPRDTADHKELRERKELSTLTKTTDVSMKSREYHDYPQSKDMKIPRTED
DESGFRVPEKEDLPKLLRKSEQNDQNGSSDSALNEETDDQKDKLKKRKQRKSGRQDAESD
ECSSYDSHEDKKIRKRKREEKKLKKEMRCRRREEEKRRRRGERRSEKQKLKSGDGSSSSS
DLAGDNSEDESVKRQKLRASNPKDTESEQKRLEIELREKALKSLRARKGYGN
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggatttttcaggggcacctccgccgatcaggacacgcgattctcgaacaag
caagcgaagcttctaaagtctcagaaattccctcatgaactggaaaatctggtggacatg
accaaagtgaagattgatgttatgaagccctggattgctaaacgcgtaactgagttaatt
gggtttgaagatgaagtgcttatcaatttcatttatggtcttttggagggagaggcagtt
aatgggaagcagattcagatttcacttactggatttatggagagaaatactgcaaagttt
atgaaggagctctggttattgcttctcagtgcacagcaaaatgtaagcggtgtccctcaa
caatttctggatgcaaaagaagaggaagctaaaataaagaaggcagagacagatcggata
gccaatgaaattcaaagaaagaaagagaaagagaagcaagaattttatgaggagaaagca
aagatggacggtgatggagcaaattcaagagataatcatagtgaattggagcctaatgtg
aagcattatcccaggggttctgccgtccaacaggaaaatgagaaagaacgtcacaataga
aatggccggagaagaagcagcaggggttcgcgttctccggattcacctaaccactcgcta
tcttcccgtgagcagcggaggtcaagaagcgtttctgggggaccgccatcaagaagtcgc
tccatttcctccgaaagacgagctcgctctccacctagacggtctattacacctcgccgg
cgccatgttgttcggcgatctcgctctccaaggcgtaggtcatacttgaatcgaagatcg
aggtctaactcacggcgcagatctccttcccctgtgcgatatagagttcgttctccaagg
cgtcatagatcgcgatctcccttgcgtcgtaggtcacgatctcccttgcgtcgtaggtca
cggtcccctgtacggcgtaggtcacggtcccctgtacggcgtaggtcaagatcccctgtg
caacgtaagtcgaggacgcccatacggagatcaccagttcagtacaagtcaaggacgtct
tcacgtcgcagatcgctttcccctgtgcatagcatgtcaccttcccctatcagaggaaga
tctccagggcatcggcggtcaccatctcctgtgcgtcgccgttcacgatctccattgcgg
cggcactcaccatctccacgtcatcagtctccttctcctgcaagaaggcagtaccgccgt
tctctgtcaacttcatcgcatcaatctatgtctcctgttcgacgaaggccctctatgcat
ggtagaaaaagatcatgttctccagggagtcgaagatctcctgcccctcaagaattaagt
tccccctcaaatattcgtcgaaattccctttcaccagttaggagaggatcgatgaagcat
acaagatcacctatccattctcctggagaaaatgctaggcaaaagaactattcccctgct
cctcatgcttctcccagcgaaagagctgaagttcagtcagggaatcgtaaaggaacaaaa
tatgcagaacggcggtctgttgtatctctgaggtcaccacagagggatgtgctggatcaa
agagatataggtggaaaacctcgaaacttttcaccatccttggaaaagtccccatctgga
tcagatgcttctaggggcagaagtggcagtgaagagcgaaggtctgttagtcctcgtggt
aggcctcgccaaaggaggggaagaatgataccacccgagagtccaaatccttcgcgaaaa
actgttgatcctaaaaatcgtcgtgatgattctaggacaagtttggatgatgaaaacaat
ttgcctagcagggagattggacgatacaaaaataggtcttcagggaaaagttctttgaag
ccagtgcgtgataaggacacactggaaactggtgatactcatggtctagctgatagcaca
cagtcaagagagcaacaactaatgaacagtgacaggccacgggacactgctgatcataaa
gaactccgcgaacggaaagagttgtcgacacttacaaaaacgacggatgtgagtatgaaa
agtagggaatatcatgattatcctcaatccaaggatatgaaaattcctcgcacagaagat
gatgagagtggtttccgggtcccagaaaaggaagatttacctaaattgttaaggaagtct
gagcagaatgatcaaaatggttcatcagattctgccctaaatgaggagactgatgatcag
aaagataaattgaaaaagaggaagcagaggaaatcgggtagacaagatgcagaatcagat
gagtgttctagctatgattcccatgaagacaagaagatcagaaagagaaaaagggaagaa
aaaaaactgaaaaaggagatgcgctgccgacgacgggaggaggagaaacgccgtcgaagg
ggtgagaggcgatcagagaagcaaaagctgaagtcaggtgatggtagtagttcgtcatca
gatcttgcaggtgataattctgaagatgaaagtgttaaaaggcaaaagttgcgagcaagc
aaccctaaggacacggagtctgagcagaaaaggctagagatagagctgcgtgagaaggct
cttaaatcacttcgagccaggaagggctacggaaattaa
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