Salvia splendens (scarlet sage): 121752380
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Entry
121752380 CDS
T07627
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121752380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121752380
03041 Spliceosome [BR:
sspl03041
]
121752380
03009 Ribosome biogenesis [BR:
sspl03009
]
121752380
03016 Transfer RNA biogenesis [BR:
sspl03016
]
121752380
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121752380
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121752380
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121752380
Complex C
U4/U6.U5 tri-SnRNP related factors
121752380
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121752380
Transfer RNA biogenesis [BR:
sspl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121752380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
EST1_DNA_bind
Motif
Other DBs
NCBI-GeneID:
121752380
NCBI-ProteinID:
XP_042003348
LinkDB
All DBs
Position
10:complement(23308972..23317267)
Genome browser
AA seq
1024 aa
AA seq
DB search
MDESPSSVKRKQPEEVSQEQQESNVRESPSKRRSLSRTCVHEVAVPTGYVSTKDESTHGT
LADPVYNGERAKTYPFKLDPFQEVSISCLERKESVLVSAHTSAGKTAVAEYAIAMAFKEK
QRVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIVFLSPAIKMVFLSATMSNATEFAEWICNIHKQ
PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFKEGNFLKLQDTFSKQNHVDGSKST
NSKGSGRIAKNGNASSGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTP
EEKDVVGEVFRNAIVCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIASGEYIQMSGRAGRRGKDERGI
CIIMVDDKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQF
QHEKALPDIGKKVSQLEQEAAVLDASGEAEVAEYHRLKLELAEHEKKMMAAITQPERVLS
FLLPGRLVKVRQGGTDWGWGVVVNVVKKPQAISSSMPAELASSRGNNYIVDALLHCSIGS
SETGSQPKPCPPQPGEEGEMHVVPVQLPLLSALSKLKISVPSDLRPKESRHNVLLAMQQL
EKRYPQGFPKLNPVKDMGIEEQEFIELASQIEELEQRLFTHPLHKNLIQQGLTGILASML
ICTFTCLILFCFQSQDVHQISSFQRKAEVNHEIQQLKTKMRDSQLQKFRDELKNRSRVLK
RLGHIDGDGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPGDKSS
EQIHLRAELAKPLQQLQESARRIAEIQRECKLEVNVDEYVEASIRPFLMDVIYCWSKGAT
FADVIQMTDIFEGSIIRLARRLDEFLNQLKGAAHAVGEAGLEEKFTAASESLRRGIMFAN
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatcaccttcatccgttaaaaggaagcagccggaggaggtttcacaagaacaa
caggaaagcaatgtgcgagaatctccctctaagaggcgtagcttatccaggacatgtgtg
catgaggtggcagtcccaactggatatgtttcgaccaaggacgaatcaactcatggcacc
cttgcagatcctgtttataacggggagcgagctaagacatacccatttaagcttgatcct
tttcaggaggtttctatttcttgcttggagagaaaggagtctgtcttagtctctgcccac
acttctgctgggaaaactgcagttgctgaatatgcaattgccatggcttttaaagagaag
caacgagtcatatatacttctcctctgaaagctttgagtaatcaaaagtacagagagttg
aatcaagagttttcagatgtcggattgatgacaggtgatgtcacgctttcacctaatgca
agttgtttggtcatgactacggaaatcctcagggggatgctttatagaggttctgaggta
ttgaaggaagttgcttgggtcatatttgatgagatacattacatgaaggatcgtgaaaga
ggtgtagtttgggaagaaagtattgtcttcttgtcccctgccatcaagatggtttttctt
tcagctactatgtcaaatgcaactgaatttgctgaatggatatgtaatatacacaaacag
ccttgtcatgtggtatacacagattttaggccgacacctctacagcactatgtgtttcct
gttggtggatctggtttatatcttgtagttgatgagaatgagcagtttaaagaaggcaac
tttttgaaactccaggatactttcagtaagcaaaatcatgttgatgggagcaagagcaca
aattccaaaggcagtggcagaattgctaaaaatggaaatgcttcaagtggctctgacata
tataaaattgttaagatgattatggaacgaaaatttcaaccagtcataatttttagtttt
agcagaagagagtgtgagcagcatgccatgtctatgtccaaacttgattttaatactcca
gaggagaaagatgtcgtgggggaagtgtttcgaaatgctatcgtatgcttgagcgaggag
gatagaaatttgcctgccatagagttaatgttgccattacttcagcgaggcattgccgtt
catcattccggtttgcttcctatcatcaaagagcttgtagagcttctctttcaagaagga
cttgttaaggccctatttgccacagaaacgtttgcaatgggtttgaacatgcctgcaaaa
actgttgttttcacaagtgtgaaaaaatgggatggtgatagtcatcgttatattgcatct
ggtgagtatatccagatgagtggtagagctggacgccgtggtaaagatgagaggggtatc
tgcattataatggttgatgataagatggagatgaacacactaaaagacatggttttgggc
aaaccagcacctttggtcagtactttcagattgagctattactcaattctaaacttgatg
agtcgtgccgagggacaattcactgctgagcatgttatcagaaattccttccatcaattt
cagcacgagaaggctttacctgacattggaaaaaaagtctcacagctcgaacaggaagct
gctgtgcttgatgcttctggagaggctgaggtggctgagtatcaccggcttaagcttgag
ttggccgaacatgaaaagaaaatgatggcagcaataacacaacctgaaagagttctctct
ttccttctacctggtagactggttaaggtaaggcaaggaggaactgattggggctgggga
gttgttgtcaatgtggtgaagaaaccacaagctatatcaagttctatgccagctgaactt
gcttcttcacgtggtaacaactatattgtggatgccctgctccactgttctatcggctca
agtgaaactggttctcagccaaagccttgtcctcctcaaccaggagaagaaggtgaaatg
catgtggttcctgttcagttgcctcttctttctgcacttagcaagcttaaaatatcggtt
ccttctgacttgcggccaaaagaaagtcggcataacgttctccttgctatgcaacagctt
gaaaagcgctacccacaaggctttccaaagctcaatcctgtgaaggatatgggaattgaa
gaacaggaatttattgagttggctagccaaatcgaggagcttgagcagaggttgttcact
catcccctacacaagaatctgatacaacaggggttaactggcattcttgcaagcatgcta
atctgcacttttacctgcctaattctgttttgcttccagtcacaagatgtacatcagatt
tccagtttccagagaaaagcagaagtcaatcatgagattcaacagctaaagacaaaaatg
cgtgattctcagcttcaaaaatttcgtgacgaacttaagaatcgatcacgggttctcaaa
agactgggtcatattgatggtgacggcgttgttcagttgaagggacgtgcagcttgcctg
atagacactggagatgagctccttgtcacagaattgatgttcaatggtaccttcaatgat
cttgatcatcatcaagttgcagctctagctagttgctttattcctggggacaaatcgagc
gaacagatacatttaagagctgaactggctaaacctttgcaacaactccaagaaagtgcc
agaagaatagctgagatacaacgcgagtgtaaactcgaagtaaatgtggatgaatacgtt
gaagcatcaatcaggcccttcttgatggatgtgatttattgctggtcaaagggagcaact
tttgcagatgttattcaaatgactgatatttttgaaggtagcatcataagattggctaga
aggcttgatgaatttttaaatcagttgaaaggagctgctcatgcagttggcgaggctggt
ttagaggagaaatttacagccgcgagcgaaagccttcgtcgcggaataatgtttgcgaat
tcattatatctgtga
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integrated database retrieval system
