Salvia splendens (scarlet sage): 121753147
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Entry
121753147 CDS
T07627
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121753147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121753147
Enzymes [BR:
sspl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121753147
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121753147
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121753147
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
zf-MYND
Motif
Other DBs
NCBI-GeneID:
121753147
NCBI-ProteinID:
XP_042004274
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All DBs
Position
10:15605229..15610237
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AA seq
599 aa
AA seq
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MVTVLRVHLPSDIPIVGCELTPYVLLKRTDKSHISDDITEFNPIDGHFLRYKWYRILSDK
KVAVCNVHPTEQATLQCLGCLKAKLPVAKSYHCSPKCFADAWPHHRLLHERAASALNENV
TEEEEVFGRFNSSGSNASLSTSQSNPNLSNANTSLYPTAVTQRNGGETWVEVGYTKIYTP
TADDVGHVLKFECTVVDVETKFTVGSTSTFSTSRVIPAPSPIPRRVIPVGMDVSRNIDFD
GRISSAMTFSVLSYNILSDAYATNDAYSYCPTWALSWPYRRQNLLREIVGYRADIICLQE
VQSDHFEEFFAPELDKHGYQAFFKMKTTEVLVGAMKNVDGCATFFRRDRFTNVKKYEVEF
NKAAQSLIEAFIPNVQKKNALNRLIMDNVALILVLEAKNSNQGTDNAGKRQLICVANTHV
NVQQEWKDVKLWQVHTLIKGLEKIAESADIPMLMCGDFNSVPGSAPHALLAMGKVDQNHP
DLAIDPLGILRPLSKLTHQLPLVSAYSSFARVVAGLGLEQRKKTDPATNEPLFTNCTRDF
IGTHDYIFYTADSLTVESLLELLDENSLRKDTALPSPEWSSDHIALFAEFRCKPRSRRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgtgcttcgggtgcacttgccgtccgatatacccattgttggatgcgaattg
actccatacgtgcttttgaagcgtactgataagtctcacatttctgatgatattactgag
ttcaacccaatcgacggccattttttgagatataaatggtatcgcatactaagtgacaaa
aaagttgcagtctgtaatgttcacccaaccgagcaggctacattacaatgccttggatgt
ctcaaggcaaaattgcctgttgccaagagttaccattgttcgccaaagtgctttgcagat
gcctggccacatcatcgtctcctgcacgagcgtgctgctagtgctttaaatgagaatgta
accgaggaggaggaagtttttggtcgcttcaatagtagtggtagtaatgctagcttgtca
acatctcaatcaaatcctaatttgtcaaatgcaaacactagtttgtaccctactgcagtt
actcaaagaaatggtggtgaaacgtgggttgaagttggatacacaaagatatacacacca
acagctgatgacgttggtcatgtccttaaatttgagtgtactgtggtagatgtcgaaact
aaatttactgtgggatctactagtactttttcaacttcacgcgtgattccagctccgtcg
cccattccacgacgggtgattcctgttggaatggatgtttccaggaatatagattttgat
gggcgtatttcatcagcaatgacattttctgtgctttcatacaatatcctatccgatgca
tatgcaactaatgatgcatacagctattgtcccacgtgggctctatcttggccttaccgc
aggcaaaatttgttaagagagatagttggctatcgcgcagacattatttgtctacaagag
gttcaaagcgaccactttgaggaattcttcgcaccagagctggacaaacatggttatcaa
gcttttttcaaaatgaaaacgacagaggttcttgttggggccatgaaaaacgttgatgga
tgtgctacttttttccgccgtgatagattcactaatgtcaagaaatatgaggttgagttc
aacaaagctgcacagtctctaattgaagcattcataccaaatgttcagaagaaaaatgct
ttaaaccggttgatcatggataatgttgcgctcatcttggttctagaagccaagaacagt
aaccagggtactgataatgccgggaaacgccagcttatttgtgtggcaaacacacatgta
aacgtgcagcaagagtggaaagatgtcaagctttggcaggttcatacactaataaaagga
ctagaaaaaatagctgagagtgcagatattccaatgctgatgtgtggtgatttcaattct
gttcccggaagtgcccctcatgccctccttgctatggggaaagttgatcaaaatcatcca
gacctagccatagaccccctcggaattcttcgtcctcttagcaaattgacgcatcagctc
ccattggtaagtgcttactcatcctttgcaagagttgtggccggactgggtttggagcag
cgaaagaaaacggatcctgctactaatgaaccccttttcacaaactgcactagagatttt
attggtacccatgattacatattctatacagctgactcattaacggtggagtctttgttg
gagctcttggatgagaatagcttgcggaaagatactgctcttccttctccagaatggtct
tcagaccacatagcactgtttgctgaattccgctgcaagccgaggtccagacgctcataa
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