Salvia splendens (scarlet sage): 121753753
Help
Entry
121753753 CDS
T07627
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121753753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121753753
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121753753
mRNA degradation factors
5'-3' decay
Decapping complex
121753753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
DUF445
EIF3I
GerPC
Motif
Other DBs
NCBI-GeneID:
121753753
NCBI-ProteinID:
XP_042004937
LinkDB
All DBs
Position
11:complement(4083461..4092548)
Genome browser
AA seq
1438 aa
AA seq
DB search
MASPGNPHAPGGGPFDMHKLFKPSTPPPQPQHPTSTPNSNPNPQSFPNNVSNANSNPSLV
SAPFPVPSASYPPPTGAGSGNYSYSPQTSPYHYHPVYTPYSNPPPPPHQEYANVHPQRSM
SYPTPPLQPQLQAPPNSQHQNNFQNPPNPHPQNPNNPGARLMALLSAPPSTMDVVPQQLS
MPMAQIHPTSSSGSDFSMPQNVNVLPSSGQGMAVSHQGPVMRMPSSKLPKGRHLIGSNVV
YDIDVRLPGEVQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTAL
RSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGSDEEDKPQITGKIVTALQI
TGEGESLHPRVCWHCHKQEVLVVGIGRRVLKIDTTKVGKGEKYSAEEPLKCPIEKLIDGV
QLVGSHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHDGQPVKSVTFV
AAPHRPDHIILITGGPLNRESKIWVSASEEGWLLPSDAESWNCIQTLELRSSEGRPEEGF
FNQVAALSQAGLLLLANAKRNAIYAVHMEYGPNPAASCFDYIAEFTVTMPILSFTGTSEV
GPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTENVVYEKTDSSVSRDAASIEGIARMEP
SGSKPAEISISSTAPKARLHESGLDNASTIRYTVGAASGESPAIQEFATSSMESKQVNLS
KAVNETDMSLATSTQLPLSPRVFRSLSGFSRSSSIEHGPPVSEQKVIEYSVDRPMDGVHG
NLSDVASLDDDSQDDISAALNHPIKFKHPTHLVTPAEILMATSSSDVNHAIEPQSEGERN
IQDVVVSNDTRNVEVEVKVVGETRFSQSNDIEPREELETFVSENKEKTFCSQASDLGMGM
ARECRVLSPEMYTVEEARQVSGTDRREADTQPSTTVEEGHDSAKDVTQKDADSSTPLAAQ
PTAPTTKGKKQKGKSAQGSGLSSQSPSEFNSTDSTVEPGVSSSTPQAETGVSQTLSMQEM
LNQIVNMQNEMQKQMALMVSVPVTKEGKRLEAVLGRSMEKAVKANSDALWARLQDENAKQ
EKAAKERMQQLTNTISNCLNKDLPAIIEKTIKRELTTIGQSVARTITPAIEKTISTSIIE
SFQKGVGDKAVNLLEKSVSSKLEALVARQIKVQFQTSGKQALQETLKSSLEGSVIPAFEM
SCRTMFEQVDTAFEKGMVEHTSVVQQQFEASHSPLALALRDAINSASSMTQTLSNELLDG
QRKLLAIAVSGANSKAPSLLSQLSNGPLGSLHEKLELPPDPTKELSRLMAERKYEEAFTS
ALQMSDVNIVSWLCSQVDLPRICSVNPLPLSQGVLLSLLQQLACDISNDTPRKLTWMREV
MTAINPTDPMISVHVRPIFEQVYQILNHQRNLPTLGGTELANIRLIMHVINSMLMSSK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggcaatccccacgcaccaggcggaggtcccttcgatatgcacaaattg
ttcaagccctccacaccgccgcctcagccgcagcatcccacctccacccccaattccaac
cctaaccctcagagcttccccaacaacgtcagcaatgctaattccaaccctagtttggta
tccgcccccttcccggtcccgtcggcatcgtatccgccgcccaccggcgctggaagtgga
aactactcctattctccccagacgtcgccgtaccattaccatccggtgtacactccctac
tccaacccccctccgccgccgcatcaggagtatgctaatgtgcaccctcagagatcgatg
tcttatcccaccccgccgctccagccacagctgcaggcaccgcctaattcgcagcaccaa
aataattttcagaaccccccaaatccccatccccaaaaccctaataatccaggtgctcgt
ttgatggcgttgctgagtgcgccgccttctaccatggatgttgttccgcagcagctgtca
atgcctatggctcaaatccaccccacttcctcctcgggctctgatttttctatgcctcag
aatgtgaacgtcttgccctcttctggccagggtatggctgtttcacatcagggcccggta
atgcggatgccgagtagtaagctgcccaaggggcggcatttaatcggaagtaatgttgtt
tacgacatagatgttagattgcctggagaagtgcagcctcaacttgaggttacacccatc
acaaaatacggatcagatcctggacttgttttggggaggcaaatcgcggtcaataagact
tatatctgttatgggctgaagttgggggccatccgggtgctcaatattaacactgctttg
agatccttgcttaagggtctagcgcagagagtcacggacatggccttctttgctgaagat
gttcaccttttggctagtgcaagcgttgatgggcgcgtttacgtgtggaaaataacagaa
ggttctgacgaagaagataagcctcagattactggaaagatagttactgccttacaaatt
actggagagggggaatctctccatcctagagtttgttggcattgtcataaacaagaagtt
cttgtagtgggaatcggtaggcgcgttctgaagattgatactacaaaagttggaaaaggt
gaaaagtattcagcagaggaaccacttaaatgtccaattgaaaagttgattgatggcgtc
caacttgttggcagccatgatggagaagtgactgacttgtctatgtgccagtggatgacc
acccgcttggtatcggcttcagtggatggaacgataaagatttgggaggatcgcaagtca
tctccaattgcagttctcaggccacatgatggacaacctgtcaaatccgtgacctttgtg
gctgctcctcatcgccccgatcatatcatacttatcactgggggccccctaaatcgagaa
tcgaagatatgggtttcagcaagtgaagaaggctggttgcttcctagtgacgcagaatca
tggaattgtatccagacgttggaattgagaagttcagagggccgaccagaagaaggtttc
ttcaatcaagtagcagcattgtcacaagctggccttcttttattagcaaatgctaagaga
aatgctatttatgctgtgcacatggaatatggtcctaacccagcagcaagttgttttgat
tatatagcagaatttacagtcactatgccaatactcagttttacagggacaagcgaagta
ggacctcatggtgaacaaatcgttcaagtgtattgtgtccagacacaggctattcagcag
tatgctttagacttgtcacagtgtctgccaccccctacagaaaatgtagtctatgagaag
acagactctagtgtctcacgagatgctgccagtattgaagggattgctaggatggagcct
tctggcagtaaaccagcagagatttctatatctagcacagctcccaaggcacgcctgcat
gaaagtggcttagataatgcatcaaccattaggtatactgttggtgctgcttctggtgag
tcaccagctatacaagagtttgctacctcaagtatggagtccaaacaagttaatttgtcc
aaagctgttaatgaaactgatatgtctcttgccacttcaactcaactccctctgagtccc
agggtttttagatctctatctggttttagtcgatcaagcagcattgagcatggtccacca
gtttcagagcagaaagtgattgaatattcagtagatagaccaatggatggtgttcatgga
aacttgtctgatgttgcttcattggatgatgattctcaagatgatatttctgccgctctc
aatcatccgatcaagttcaaacaccccactcatttggtaactcctgctgagatattgatg
gccacttcatcctctgatgttaaccacgcaattgagccccaaagtgagggtgagcgtaat
attcaagatgtggtagttagcaatgatacaaggaatgttgaggtagaggtcaaagttgtt
ggcgaaacaagatttagtcaaagtaatgatattgagccccgagaagaacttgagactttt
gtgtcagaaaataaggaaaaaaccttttgctctcaagcttctgatcttggaatgggaatg
gctcgggaatgccgtgtcttgtctcctgaaatgtacactgtggaggaagctaggcaggtt
agtgggacagatcgaagagaagcagatacccaaccctctaccacagtggaagaaggtcat
gactctgcaaaggatgtgactcagaaggatgccgattcttcaacccctttggctgctcaa
ccaactgcaccaactacgaaagggaagaagcaaaagggaaagagtgctcaaggatcgggt
ctatcttcgcaatctcctagtgagttcaattcaactgattctactgttgaaccaggtgtt
agctctagtactccccaggcagaaactggagtttctcaaacgctttccatgcaagagatg
ctgaatcagattgtgaacatgcaaaatgaaatgcagaaacaaatggcactgatggtttct
gttccagttaccaaagaggggaaaagacttgaagcagtcttgggaagaagcatggagaaa
gctgtcaaagccaattctgatgctttgtgggctcgtcttcaagatgaaaatgcaaaacag
gaaaaagcagctaaagagcgcatgcaacagctaacgaatacaatcagtaattgcttaaac
aaagacttgcctgctatcatagagaaaactatcaagagagaactgaccacgattggacaa
tctgtggcacgcaccattacgccagccattgagaaaacaatttccacttccattatagag
agcttccagaaaggagtaggtgataaagctgtaaatctgttggaaaaatcagtcagctcc
aaactcgaagctttggttgctaggcaaatcaaagttcaatttcaaacttctggcaagcaa
gctcttcaggaaaccctgaaatcgagcctggaaggttctgtaatccctgcatttgagatg
tcatgtaggaccatgtttgagcaggtcgatacagcatttgaaaaaggaatggttgaacat
acgtcagtggttcagcaacaatttgaggcatcacattctccattagcgcttgcactaagg
gatgctataaattcggcatcatcaatgactcaaactttgagcaacgagttgcttgatggt
caaagaaaattgttagctattgctgtatccggagcgaattctaaagctccaagtctattg
agtcaactaagtaatggtcctttgggttcacttcatgagaagcttgagcttccccctgac
ccgaccaaagagctatctagattaatggctgagcgcaagtatgaggaagctttcacctct
gccctacagatgagtgatgttaatatagtatcttggctgtgctctcaggtggacttaccc
agaatttgttcggtgaatccccttcctttgagccaaggtgtacttctctcccttctacag
caattggcttgtgatattagcaatgacacacctcgtaagttaacgtggatgcgggaggtt
atgactgcaataaatccaactgacccgatgatctcagtacatgtacgcccaatctttgag
caagtatatcaaatactaaatcaccagcgcaaccttccaacgttgggcggtactgaactt
gccaacatccgcttgatcatgcatgtcatcaactccatgctcatgagctctaaatga
DBGET
integrated database retrieval system
