Salvia splendens (scarlet sage): 121753939
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Entry
121753939 CDS
T07627
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121753939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121753939
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121753939
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121753939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121753939
NCBI-ProteinID:
XP_042005175
LinkDB
All DBs
Position
1:43379911..43396808
Genome browser
AA seq
1411 aa
AA seq
DB search
MNIIDQGSMQFTKKPYVEDVGPRKIESIKFCTLSEKEILKISEVQVSRGIYYNDVRKPEA
SGLLDPHMGPPNKLGKCETCGGNFHNCPGHCGYLNLALPVYNVGFLATIVDILKCICKKC
SRILLEEKERRDFLKQMRGPKLEHLKKVELQKKTVKRCNGMGGTRRAVVCSRCGYINGMV
KRAQLKIVHDRARVADSADCSLEECRSALSHTKTNMPLPSYLDPKRVYELLKNMCDEDCE
LLYLNDRPEKLMLTSILVPPTSTRPSVFVDGGTQSNENDITERLKYIIQANASVRSEMAE
TDSQSNRCMVSWQLLQEEVAQYMNSDVRGLTPQPANSTRRPLSGFVQRLKGKQGRFRCNL
SGKRVEFTGRTVISPDPNLKITEVAIPILMARILTYPERVSHHNIEKLRQCVRNGPQKYP
GAKFIRTPDGHEISLMYSARKHHADQLQYGCIVHRHLEDGDVVLFNRQPSLHRMSIMSHR
ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEI
LVASTQDFLTSSFLITRKDTFYDRSAFSLMCSYIGDAMDPIDLPTPALVKPVELWTGKQL
FSVLLRPHAKMRVYLNLTVAEKSYSKSRETMCSKDGFVYIRNSELISGQLGKATLGNGNK
DGIYSVLLRDYGPHAAATCMNRMAKLSARWIGNHGFSIGINDVQPGATLNKEKKATLDNE
YGHCTDYIRSYTSGSLELLPGCNNAETLEAKITETLNKIRETTADVCMKNLNWRNSPLIM
SQCGSKGSPINICQMIACVGQQSVGGQRAPNGFVDRTLPHFERGAKDPDAKGFVQNSFYT
GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIFYDNTVRNASACIVQF
AYGGDAMDPAQMEEKSGLPLNFERLYMKAKATCPATEQKSLTTDEIEKIVENTIGRRLVK
SSMTFEGGSSESSHSLETTSKDECLAAFAESIRNFIKKKEPSSVREKLKLSEGTHSEEDR
RYLENVASNISGITQRQLMVFLETCISRYNSKKIEAGTAIGAIGAQSIGEPGTQMTLKTF
HFAGVASMNVTLGVPRIKEIVNGAKNIKTPIITTHLDANNNAITAKMVKGRIEKTLLEQV
AQSIKTSQSSRSASVVVTLDMGRIKEAHLHIDAYSVKDSILQTTPKLKLKEQQIRVVDER
KLEVDLNDDKSKLQFELHGLKSKLAKVVVKGIRTVERTIILNESKEKDPACKKLTLLVEG
SGLLSVMGTEGINGHKTVSNHIMEVKQVLGIEAARKKIIDEINYTMSSHGMTIDIRHMML
LADLMTFKGEVLGMTRFGVERMRDSVLMLASFEKTADHLFNASVNGRVDKIEGVSESIIM
GIPMQVGTGMLKVKQCVPSVKFTYAPDPIIR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaatattatagatcaaggcagtatgcagttcaccaagaagccatatgtcgaagacgtc
ggcccccgaaagatagaaagtattaagttctgtacactatctgagaaggaaatactaaaa
atttctgaagttcaagtttcgcgcggcatttactacaatgacgtcagaaagcctgaagct
agtgggttgttagatcctcatatgggaccaccaaacaagcttggcaaatgtgaaacatgt
ggtggaaattttcataactgcccaggtcattgtggatacttgaatctagcccttcctgta
tataatgtcggatttttggctacgatcgttgacatattgaagtgcatttgcaagaaatgc
tccagaatactccttgaagaaaaagagcggcgagatttccttaagcagatgagaggtcca
aaacttgagcatttgaagaaggttgagttacagaagaaaacagtaaaaaggtgtaatggc
atgggaggaactaggcgcgctgttgtgtgctccagatgtggatatattaatggtatggtt
aaaagggcacaattgaaaatcgtacatgatcgtgctagagttgctgacagtgctgattgt
agcttggaggaatgccgatcagctctatcccatacaaagacaaatatgcctttgccttca
tatcttgatcctaaaagggtctatgagctactgaaaaatatgtgtgatgaggattgtgag
ttgctttatctaaatgatagacctgaaaagcttatgcttactagtattcttgtgccacca
acttccacacgaccttcagtttttgtggatggtggaacacagagtaatgaaaatgacatc
acagagagactaaaatatatcatccaagccaatgctagtgttcgctcagaaatggcagaa
acagactctcaaagcaacagatgcatggttagctggcagcttctgcaagaggaggttgca
caatatatgaatagtgatgttcgtggattgacaccacaacctgcaaatagtactagaaga
ccattgagtggttttgttcagcgtcttaaaggaaagcaggggagatttcgttgcaattta
tcagggaagcgtgtagagtttactggcaggacagttatttctcctgatcctaatttgaaa
attactgaggttgctattccaattttaatggctcggattttgacttatcctgaacgagtt
tcacaccataatattgagaaattgcggcaatgtgttcgtaatggcccccaaaaataccct
ggtgctaagtttataaggacacctgatggtcatgagatatcattgatgtattctgccagg
aagcatcatgcagatcagttgcagtatgggtgcattgtgcatcgtcaccttgaagatgga
gatgtagttttatttaataggcaaccgagtttgcaccgaatgtcaatcatgtcccatcgg
gcaaggataatgccttggcgaacactgagattcaatgagtcagtgtgcaacccatacaat
gctgactttgatggtgatgagatgaatatgcatgtaccacaaacagaagaggcccgtact
gaggctcttatgctgatgggggtgcagaacaatttgtgcaccccgaaaaatggagaaatc
ttggttgcatcaacacaggattttctaacttcttcctttcttataacaagaaaagacaca
ttttatgaccgctcggccttttcactcatgtgttcatatataggtgatgccatggaccca
attgatttgccaactccagcattagttaagccagtggagctatggactggcaaacaatta
ttcagtgtgctattgcgtccccatgcaaaaatgagagtatatttaaatctaactgtagca
gaaaagtcatattcgaagtctagagaaactatgtgttccaaggatggttttgtgtatatt
cgcaatagtgagctcatcagcgggcagcttgggaaggccactttaggtaatggaaacaag
gacggtatttactccgttcttctcagggattatggtcctcatgctgctgctacctgtatg
aatcgcatggcaaagttaagtgcacgatggataggaaatcatggattttcaattgggatc
aatgatgttcaacctggggctacattaaacaaggagaagaaggcgactctggacaatgag
tatggtcattgtaccgattacataagaagttacacatctggaagcctggagctgttacca
ggctgcaataatgcagagactcttgaagccaagataactgagacgcttaataaaattcga
gaaactactgccgatgtttgcatgaagaatttaaattggaggaacagccctctaataatg
tcccagtgtggttctaaaggttctcctattaatatctgccagatgattgcgtgtgttggt
cagcaatctgtaggaggtcagagagctcccaatgggtttgttgatcgaacactgccccat
tttgaaagaggagcaaaagacccagatgctaaaggctttgttcagaattccttctacact
ggtttatctgcgactgaattttttttccacaccatgggtggtagagaaggtcttgtggat
acagcggtgaaaacagccgatacgggttacatgtctcgtagattgatgaaggctttggag
gatctatctatcttttatgataatacagtgagaaatgccagtgcttgcattgtgcaattt
gcctacggtggtgatgctatggatcctgcacagatggaagagaaaagtgggctcccgctg
aactttgaaagattatatatgaaagccaaggctacctgccctgcaacagagcaaaagagt
ttaacgactgatgaaattgagaaaatagttgaaaacacgatcgggagaagactagtaaaa
tcatccatgacttttgaaggagggtcttcagagtcttctcattcattagagacaacatct
aaagatgaatgtttggcagcttttgcagagtcaataagaaattttattaagaaaaaagag
cctagctcagttcgcgagaaactgaaattgagtgaagggacacattctgaagaagataga
cgctatctggaaaatgttgcctctaatatatctgggataactcagcgacaattaatggtc
ttcctagaaacttgtatatctcgttacaattccaagaaaattgaagcgggaactgcaata
ggagccattggagctcagagtatcggagagccaggaacgcagatgacattaaaaactttc
cactttgctggagtcgcaagcatgaatgttacccttggcgttcctaggattaaagaaatc
gttaatggtgctaaaaatatcaagacaccaattattactacccatttggatgctaacaac
aatgccataacagctaaaatggtgaaggggcgtattgagaaaactcttctggagcaggta
gcccagagtataaagacttcacaatcgtcgaggtcagcatccgttgttgtaacacttgac
atgggtagaataaaagaggctcacctacatattgatgcgtactcggtaaaggattcaatt
ctacaaaccaccccaaagttaaaactgaaagagcagcaaattagagtagtggatgaacga
aaacttgaagttgatctgaatgatgataaaagtaaacttcaatttgaactccatgggctt
aagagtaagctcgccaaagttgtagtcaagggaatcaggactgttgagcggactataata
ctaaatgaatcaaaagaaaaagatcccgcgtgcaaaaaattgacattactagtagagggg
agtggtcttttgtctgtcatgggcactgaaggaattaatggtcacaagacagtgagtaat
cacatcatggaagtaaaacaggtacttggaattgaagcggcaaggaagaaaataattgat
gagataaactacaccatgtcaagccatggcatgaccattgacatacgacacatgatgctg
ctggctgacttaatgacattcaagggtgaagtgttgggtatgacaagatttggcgtggag
agaatgagggacagtgtcttgatgctcgcttcatttgaaaagaccgcagatcacctcttc
aatgcttctgtgaatgggagagtcgataagattgaaggagtctctgaatccatcatcatg
ggcatacccatgcaagttggaacgggaatgcttaaagtgaagcaatgtgtgccatctgtt
aagtttacgtacgctccagatccaattatacgatga
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