Salvia splendens (scarlet sage): 121754180
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Entry
121754180 CDS
T07627
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sspl04812
]
121754180
Cytoskeleton proteins [BR:
sspl04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121754180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
eIF2A
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
PAN2_N
VPS8_N
WDR54
Motif
Other DBs
NCBI-GeneID:
121754180
NCBI-ProteinID:
XP_042005469
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Position
11:complement(7003030..7013550)
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AA seq
804 aa
AA seq
DB search
MATTTKRAYKLQEFVAHSLSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH
SSGVDSVSFDSSEVLVAAGAASGTVKLWDLLEAKIIRTLTGHRSNCISLDFHPFGEFFAS
GSLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL
HDFKCHEGQVQSIDFHPHEFLLATGSADKTVKFWDLETFELIGSTAPETSGVRCMTFNPD
GRTLLCGLHENLKVFSWEPIRSHDTVDVGWSKLSDMNVHEGKLLGCSYNQSCVGVWVVDI
SRTESYAIGKTARITGDTDAKSNSSGSSEDNVKANLGRLSIPNNADPVKETRSLTRLSVP
QNSDKDSKSSASTLSTPQKSNISVVPKTMQINAPAVSSATNPRRQAAKPQSVANILFNRS
DVMPVIVPRNNPRAEQVTEFRKEDDPVKAVPLHLQSKTSDVRKIMNTRDVLERTNVPTQS
DNEPSKSMDSNATDKTFSTSVKNSISGLVADRKARDDKPMISRRVDTNAAIDTFARYEHE
SYEFRGNNTNAEASHVEGQRGVGRTHLILSNWEQKGRNSYRPGPASGNISGRLNARSYPS
PDENESVSASDEDTIADLIERHDQFVGSMRSRLGKLQVVLNYWQRHDIRGALSAISKMGD
QSVLADVMSLLAEKTDAVTLDICSCLLPLLTALVESDMDRHQDIALDMLIKLVRAFGSVI
YSSLSAHASVGVDIEAEQRIERCNLCYVELEKLKCSLPALSRYFYLKYGFQLVQYPNFYV
LFCRRGGNIAKSAQELNLALQEIS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccaccaaacgtgcttacaagctacaggaatttgtagctcattctttaagt
gtaaactgcctaaagattggaaggaaatcatcaagggttcttgtgactggaggggaagat
cacaaggtcaatctctgggctattggtaagcccaatgccatactgagtttgtcaggccat
tccagtggagtagattcagttagctttgattcatcggaggttttggttgctgctggagca
gctagtggtaccgttaagctttgggatttgctggaggctaagatcatacgcaccctcact
ggtcaccgctccaattgcatatccttggactttcatccttttggagagttctttgcatct
ggttccctggacacaaatctcaaaatatgggatatcagaaggaaggggtgtatacacact
tacaagggtcatactcgcggagttaacgcgattaggtttactcccgacgggcggtgggtt
gtttctggtggagaggacaacactgtgaagctatgggatttaactgctggaaagcttttg
catgattttaaatgtcatgaaggccaagttcaatccatcgatttccatccgcatgagttt
ttgctggcaacaggctcagctgacaaaactgtaaaattctgggaccttgaaacttttgag
ctgattggatcaactgcacctgagacctccggagtacgctgtatgaccttcaatcctgat
gggagaacactgctttgcggcttgcatgagaatttgaaagttttctcatgggaaccaata
agaagtcatgatactgtagatgtggggtggtctaaattatcagacatgaatgtccatgaa
ggaaagcttctaggatgttcttataaccagagttgtgttggagtttgggttgtagacatt
tcgcggactgaatcatatgcaattggcaaaactgctcgaataactggtgatactgatgca
aaatcgaattctagtggttcatcagaggataatgtgaaggccaatttgggcaggctttct
attccaaataatgctgatcctgtgaaggaaaccagatctctcacgaggctctctgtcccg
cagaattcagataaggattctaaatcaagtgcatctactctgagcactcctcaaaagtca
aatatcagtgttgttccaaagacaatgcagatcaatgcaccagcagtttccagtgcaaca
aatccaaggcggcaagctgcaaagccccaatcagtagcgaatatcttattcaacagatct
gatgtaatgcctgtgattgtgccaagaaataatcctagagctgagcaagttacagaattt
agaaaagaagatgatccagttaaggctgtacctttacatttacagtccaaaacttctgat
gttcgtaaaattatgaacaccagagatgttttggagagaacaaatgttcctactcagtct
gataatgagccctcaaagtctatggattcgaatgccacggataaaacttttagtacatca
gttaagaactcaataagtggacttgttgcagacagaaaagccagagatgataaacctatg
atttcaagaagagttgatacaaatgctgctattgataccttcgcgagatatgaacacgaa
agttatgaatttcgaggaaataatacgaatgcggaggcatctcatgtagaaggtcaaaga
ggagtaggtagaacacatctgattctctctaactgggaacagaaaggaagaaattcttac
cgccctggtcctgcttctggaaatatctctgggagattaaatgctagaagttatccttca
cctgatgaaaacgagtcggtctctgccagcgatgaagatactattgctgatttaatagaa
cgacatgatcagtttgttggctcaatgaggtctcgattaggaaaactgcaggttgtcctt
aactactggcagagacatgatattagaggggctcttagtgcaataagcaaaatgggtgac
caaagtgtgcttgctgatgtcatgagccttttggcagaaaaaactgatgctgttacatta
gatatttgttcatgtcttttgccactcctgacggcactcgtggaaagtgatatggacagg
catcaagatattgcgttggatatgctcataaaattggtgagagcatttggttccgtgatt
tactcttcactgtcggcgcatgcatctgttggtgtagacatcgaggcagagcaaaggatt
gagcgctgcaatctctgctatgtggaacttgagaaattaaaatgttcccttcctgctctt
tcaaggtatttttacttaaaatacggcttccagttggtgcaatatcccaatttctatgtt
ttgttttgcagaagaggaggcaatatcgccaagtcagcacaggaactgaatctggcgctg
caggaaatttcttga
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