Salvia splendens (scarlet sage): 121754857
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Entry
121754857 CDS
T07627
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121754857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121754857
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121754857
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121754857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121754857
NCBI-ProteinID:
XP_042006083
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All DBs
Position
11:33927933..33928775
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AA seq
280 aa
AA seq
DB search
MAEIEIRKVWASNLESEICLIQGFLHQFPIISMDTEYPGTVFTIKTTDITKHLLSSLSAA
DTYAVMKRNVDALRLIQLGLTLSDSSGALPLHDGRRVGAWEFNFADFDSASDLHNPDSLS
LLRRQGIDFAQNRLAGVDSRSFALHFKLSGLAFLRRAVWVTFHGAYDLGFMVKILTGRRL
PDSLAEFVGLVNAHLGPRVYDAKPMARACGLHGGLEAIGKGMGLERALGRSHQAGSDSLL
TMLVFVELMKKFGKEEQIMEEFNYVFFGLTETLLHFEGVH
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaatcgagatccgtaaggtttgggcgagcaatctcgagtcggaaatctgtcta
atccaaggcttcctccaccaattcccgatcatctccatggacaccgagtaccccggcacc
gtcttcacgatcaaaaccaccgacatcacgaagcacctcctctcctccctctccgccgcc
gacacctacgccgtgatgaagcgcaacgtcgacgccctccgcctgatccagctcggcctc
accctctccgactcctccggcgccctccccctccacgacggccgccgcgtcggcgcctgg
gagttcaacttcgccgatttcgactccgcctccgacctccacaaccccgactccctctcc
ctcctccgccgccagggcatcgacttcgcccagaaccgcctcgccggcgtcgactcccgc
tccttcgccctccacttcaagctctccggcctcgccttcctccgccgcgccgtgtgggtg
acgttccacggcgcctacgacctagggttcatggtgaagatcctcaccgggcgccgcctc
cccgactccctcgcggagtttgtggggctcgtgaacgcccacctcgggccgagggtgtac
gacgcgaagcccatggcgagggcgtgcgggctgcacggggggctcgaggcgatcgggaag
gggatgggcctcgagcgtgccctcgggaggagccaccaggccggatcagatagcttgctc
acaatgctggtttttgtggaattgatgaagaaatttgggaaagaggagcagattatggag
gagtttaattatgtgttttttggattgactgaaactctgcttcactttgaaggtgttcat
tga
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