Salvia splendens (scarlet sage): 121755007
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Entry
121755007 CDS
T07627
Name
(RefSeq) autophagy-related protein 16-like isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
121755007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sspl04131
]
121755007
03029 Mitochondrial biogenesis [BR:
sspl03029
]
121755007
Membrane trafficking [BR:
sspl04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121755007
Others
Specific organelles associated proteins
Auto phagosome
121755007
Mitochondrial biogenesis [BR:
sspl03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121755007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_TEP1_C
ATG16
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_VPS8
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_ACSF4
WD40_RFWD3
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_WDR35_TULP_N
WDR54
PEP5_VPS11_N
Beta-prop_RIG_1st
DUF7165
Beta-prop_NUP159_NUP214
Ge1_WD40
PQQ_2
Rab11-FIP3
VPS8_N
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
121755007
NCBI-ProteinID:
XP_042006226
LinkDB
All DBs
Position
11:complement(30849758..30853762)
Genome browser
AA seq
509 aa
AA seq
DB search
MAQGDAAMDAIKHALKALRKRHLVEEGAHSPAFIALSRPIVSQGSEWKEKAENLELELQQ
CYKAQSRLSEQLVVEVAESRTSKALMQEKETMISELQNELSQARDECSRLASLLEEKTKA
LDLLISEHQEVKGQLEATILRADNAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVNR
LKGSSMENLAHQQVDGVVRRCEDGAEYYVESTVPSTCKQRIPAHDGGCASILFEHNSSRL
VSGGQDKAVKLWDTNTGSSTRTLYGCLGTVFDLCITHDNKSIIAASSSNTLYVWDVSSGR
VRHTLTGHTDKVSAVDVSKVSNRNVVSAAYDRTIKVWDLQKGYCVNTLLCYSNCNALCFS
MDGQTICSGHVNGNLRLWDIQTGKVLSEIAAHSSSAVTSLSLSRNGNMLLSSGRDNLHNL
FDTRTLEICANLRGNGRVASNWSRSCLSPDDGYVAAGSDDGSVEIWSVGNAKIVSTLKEH
TSPVLSCAWSELGKPLATCDKNGNICIWS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaggagatgctgcaatggatgcaataaagcatgctctaaaagctctgagaaag
cggcatttagtggaagagggggcacattcacctgcttttattgcgctatctcgcccaatt
gtgtctcaggggtcggagtggaaagagaaagctgaaaatcttgaattggagctccaacaa
tgttacaaagctcagtctagattatctgaacaacttgtggtggaagtggctgaatccaga
acttcaaaagcattaatgcaagagaaagaaactatgatatccgagttgcaaaatgagctt
agtcaagcaagggatgaatgctcccgtttagcttcactgttggaggaaaagactaaggct
ctggacttgttgataagtgagcatcaagaagttaaaggacaacttgaggcgaccattctg
agagctgacaatgcagaagcagaaaacaagatgctaattgaccgttggatgttggaaaaa
atgaaggatgctgagcgtctaaatgaggcaaacgctctttatgaagatatggtgaatcgt
ctcaagggaagcagcatggaaaatctcgcccaccaacaagttgatggcgtagtccgccga
tgtgaagatggtgcggagtattacgtcgagtcaaccgtcccctctacatgtaagcaaagg
atccctgctcatgatggtggctgcgcctccatattgttcgagcataactcctctagattg
gtcagtggaggacaagacaaagcagttaaactgtgggatacaaacactggatcatcgact
cgcacactttatggttgtctgggcacagttttcgatctctgcatcacccacgacaacaaa
tcgattattgcagccagcagttcaaatactttgtatgtttgggacgtaagctcaggccgt
gtacgacatactcttactggtcacacggacaaggtcagtgctgtggatgtcagcaaggtg
tctaaccgcaatgttgtcagtgcggcttatgatcgaaccataaaagtttgggatcttcag
aaaggctactgcgtcaacactcttctgtgctacagcaactgcaatgccctctgctttagt
atggatgggcagaccatttgctccggccatgtaaatgggaatctccgactatgggatatt
cagacagggaaagttctcagtgagatcgcagcacattcctcttctgcagtaacatcgtta
tcactgtccagaaacgggaatatgttgctgtcgagtggaagggacaacttgcacaatcta
ttcgacacgcgcactctcgaaatctgtgcaaatttgagagggaatgggagagtggcgtct
aactggagtaggtcttgtttgagtcctgacgacggttatgtcgctgctggatctgatgat
gggtccgtggaaatctggtctgttgggaatgccaaaatagtgagcacgctgaaggagcat
acatctcctgtgttgagctgcgcgtggagtgagcttggtaagcctttagcaacttgtgat
aagaatggaaacatttgcatttggtcttga
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integrated database retrieval system
