Salvia splendens (scarlet sage): 121755188
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Entry
121755188 CDS
T07627
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121755188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121755188
03041 Spliceosome [BR:
sspl03041
]
121755188
03036 Chromosome and associated proteins [BR:
sspl03036
]
121755188
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121755188
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121755188
Complex B
121755188
Complex C
U2 SnRNP specific factors
121755188
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121755188
TFTC complex
121755188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
121755188
NCBI-ProteinID:
XP_042006413
LinkDB
All DBs
Position
1:45037601..45042031
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQLSTGILCAINGSFSGGKSQEIAVARGKVLELLRPDDNGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTLEKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDSVARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDVFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSATLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKVSNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPGGIRHIREDGRINEWRTPGKR
TIVKVGSNRNQVVIALSGGELIYFEIDMTGQLMEIAKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDTMDILSLQSVSSPPESLLFLEVQASLGGEDGADHPANLFL
NAGLQNGVLYRTVVDMVTGTLSDARSRFLGLRAPKLFSIFVRGRQAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGESFNETAIPLRYTP
RKFVVHPKRKLLLIIESDQGAFTAEEREAAKKESFESAGMGENGNAEQMENGDDEENNNP
LTDEQYGYPKAESGRWVSCIRVLDPKTTQTTCLLELQDGEAAFSMCTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFKEDGKVLELLHKTQVEGVPLALAQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNSITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSLGAFLPFTSRDDVDFFSHLE
MHLRQEYPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLSMDMQRKIADELDRTPGEIM
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctaacccttcaactatccaccggaatcctctgcgccataaatggc
agcttctccggcggcaaatcacaggagatcgcggtcgcgcgcggcaaggtcctggagctt
ctgcgccccgacgacaacggtaagctccagtctctcctctctgttgaaatcttcggtgct
attcgctcgttagctcaatttcgcctcactggtgcgcaaaaggattacatagtggtcggg
tcggattcggggcgcattgtaatccttgagtacaataaagagaagaatacgctcgaaaaa
gttcatcaggagacgtttgggaagtcgggatgccgtaggatagtacctggccagtacttg
gcaattgaccctaagggtagagctgtaatgattggtgcgtgcgagaagcagaagcttgtt
tatgttttgaatagggatagtgtagctaggttaactatttcgtctccgttggaggcgcac
aagagccacactatagtttactcgatttgtggggtggattgtgggttcgacaatcctatt
tttgcggctatagaactggattactcagaggcagaccaggaccccaccggtcaagctgct
aatgaggcgcaaaagcatttgaccttctatgaattggatttggggcttaaccatgtgtct
aggaaatggtccgagcaggttgataatggtgctaatatgcttgtgactgttcccggtggt
ggggatgggccgagtggcgtgcttgtttgtgcggaaaattttgttatatacaagaatcag
gggcaccctgatgtgagggcagtcattccgaggcgtgaggacttgcctgcagagcgtggt
gtcttgattgtctcggctgctatgcataagcagaaatccatgtttttcttcttgttgcaa
actgaatatggggatgtattcaaagtgacactggaccatgacaatgatagagtaaaagag
ttgaagatcaagtattttgatactattccagtcacatcttccttgtgtgtcttgaaatct
gggtttctgtttgctgcatcagagtttggaaaccatgccttgtatcagtttcaggcgatt
ggtgatgatcctgatgtggaggcttcttctgctacactgatggaaacagaggaaggtttc
cagccagtgttcttccagcctagaaagctgaagaatcttgttcggatcgatcaaattgag
agcttaatgcctattatggatatgaaagtgtccaatctatttgaggaagaaacccctcaa
atattttcactttgtgggcggggacctcgttcttctctgcggatactgagaccaggtttg
gctattagtgaaatggcagtttcgcaattacctggtgttccaagtgctgtatggactgtc
aaaaagaatgtgaatgatgaatttgatgcctatattgttgtctcttttgcaaatgccact
ctcgtactttccattggtgaaactgttgaagaagttagtgatagtggatttcttgacact
acgccttctcttgctgtttctttgattggtgatgactccttgatgcaagtccaccctggt
ggtatcaggcatatcagagaggatgggcgtatcaatgaatggaggactccaggaaagaga
acaattgttaaggttgggtctaatagaaatcaggttgtcattgcactgagtggaggggag
ctaatatatttcgaaatagatatgacagggcagctgatggagattgcaaaacatgaaatg
tccggagacattgcctgtttagatattgctcctgtcccagaaggacgacagagatctcgc
tttctggctgttggatcttatgacaatacgatccgcatcttgtctttggaccccgatgac
accatggacattttgagtctccagagtgtttcatctcctccggagtccctactctttctt
gaagttcaggcttcattaggaggtgaggatggagcagaccaccccgctaacctctttcta
aatgctggcttgcaaaatggtgttctatacaggacggttgtggatatggtgactggcaca
ctctcagatgctcgttctcgattcttaggtctcagagcacctaagctgttttctattttt
gtgagagggagacaagctatgctttgcttgtcaagtagaccttggcttggatatatacac
caaggtcacttccttcttacccctctgtcatatgagacacttgaatatgctgcctccttt
tcgtcggaccagtgtgcagaaggtgttgtagctgtggctggggatgctttgagggttttc
accatcgagagactaggagaatcatttaatgaaactgctatacctttgaggtatacacca
aggaagtttgttgttcatcccaagcgtaagcttttgcttataatcgagagcgatcaggga
gcattcactgcagaagaacgtgaagctgcaaaaaaggaatcatttgagtctgctgggatg
ggtgagaacggaaatgcagagcagatggagaatggtgacgatgaggagaacaataatcct
cttacagacgaacaatatggttatcccaaggcagagtctggaaggtgggtttcttgtatc
agagttttagacccgaagacaacacagacgacctgtttacttgagcttcaggatggtgaa
gcagcatttagcatgtgcactgtcaattttcatgacaaggagtacggaactcttttggct
gtaggaactgcaaagggcctacagttttggcccaaaagatccttcgaggctggatatatc
catatatataggttcaaggaagatgggaaggttcttgaacttctgcataaaacacaagtg
gaaggtgtccctcttgctttggcccaatttcagggaagactgctggctggaataggaccg
gtgcttagattgtatgatttggggaaaagaagattgcttaggaagtgtgagaataagttg
ttccctaattcaattacatctatccagacataccgtgatcggatttatgttggtgatatg
caggagtcattccactactgcaagtatagacgtgatgaaaaccagctgtacatattcgct
gatgacacagtccccagatggcttactgctgcacagcatgtagatttcgacaccatggca
ggggcagacaaatttggaaatgtttactttgtgcggttgccacaagatgtctctgatgag
attgaagaagatccaactggtggtaagataaaatgggagcaggggaagctgaacggggca
ccaaacaaagtggaggaaatagttcaattccacgtcggtgatgtggtcacttgcttgcag
aaggcatctttgattccaggaggtggggagtgcctcatttatgggactgtaatggggagt
ttgggggcgttcctcccattcacatcccgcgatgatgttgatttcttctcgcatttggag
atgcacctgcgacaggagtacccacctttgtgtggcagagaccacatggcctatagatct
tcctacttcccggtgaaggatgtgattgatggagatttgtgtgaacagttcccaactctg
tctatggatatgcaacgcaaaattgcggacgagctcgatagaactccaggggagatcatg
aagaaactggaagagataagaaacaaaatcatctga
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